Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73840 231 / 3e-72 ESP1 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) AT1G71800 55 / 4e-08 CSTF64 cleavage stimulating factor 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061200 [exp] 62 / 2e-10 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009030 [exp] 224 / 9e-70 AT1G73840 197 / 2e-59 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10009670 [exp] 215 / 3e-66 AT1G71800 192 / 7e-58 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 61 / 6e-10 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 60 / 2e-09 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 60 / 2e-09 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10006055 [exp] 59 / 2e-09 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10014474 [exp] 41 / 0.0001 ND 43 / 4e-06
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14304 [poplar] [flax] CSTF_C Transcription termination and cleavage factor C-terminal PF14327 [poplar] [flax] CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2
Representative CDS sequence Show only first row Show all	>Potri.012G056200.1 pacid=42783589 polypeptide=Potri.012G056200.1.p locus=Potri.012G056200 ID=Potri.012G056200.1.v4.1 annot-version=v4.1 ATGACGGGAAAGCCAATCGCCGGCGAAGGTTTACCAGCGAACCTGGCCGGAATGACAAAGAACCAGCTCTACGACATCATGTTTCAAATGAAGACATTAA TAGAGCAGAACAAACAGCAGGCCAAGGAGATATTAATCCAGAACCCTCTCTTGACCAAAGCCCTTTTCCAGGCACAGATTATGCTAGGAATGGTGCAGCC TCCTCAAGCGATTCCTAATATTCAGCCAGCAGCATCACAGCAACCTCAGCTATCAGCACAACCATCTCGGCAATCAAACATTCAAGCTGCACAGACACTG CCCGGACAAGGTGCTTTGCAGGATCAAACAAGTGTCTCTCAATCCCAACCACCAATGAGGAAACAACACCAGAGTCAACCTGCGATGTCGATATCTGCTC CTCCTGGTCCTCCAGTGAATCTTCAGTCTCAGCCATTGCCTTCACATCCCTTACATATGCCACAGCAGCCTAAGGGGCATGTGAATCCTCAAGTGACCCC AATGTCTGTTACTCAACCCTCTCAACTTCCAAACCTGCCTCCAGCCTCTAGTCATTCTGTTTCACAGCCACTACCAATTCATCAAACCCAAATGTCTTCC GTCTCCAGCCAGTTGCTGCTGCCATTACAGAAAACTGGAATTCCTCATCTGCCATTACAACAACCATTTCCATCTCAACCCCGAACAGCTTCTGTTCCAA GCTTTCATCATCAGTATGGGCAACAAATGGGTCCCAATATGGGTTACCAACATGCTGGAGCTCCTCATCATCCTTCACAGCCCATGTTTCATTCAAGCAA CAAACCTCAGTCTAGCATGGGACCTTCATTTCCACAAGGACAGCCACCTCTTTCAATTCAGCAACCACCTCAATCATATCAGGCGGGAGGTTCACATCTA GGGGCGGAGTACAACAGTCAAGTTCCAACTTCAATGCAAGTTGATAGAGGATCTTCTTGGATGTCTGGGCCACCAGATAGTTCAACAATGACACAGCTTG CAGGACCCCCGCAATTCAATCCTGGTCAGATGGCCCAGGGCAATCAGCCTTCTCGCACAGCACCTATGTCTTCTGAGATGGAGAAGGCACTACTCCAGCA GGTCATGAGCCTCACGCCAGAACAGATTAATCTTCTGCCTCCAGAGCAAAGAAATCAAGTGCTTCAGCTGCAACAGATGCTACGACAGTAA
AA sequence Show only first row Show all	>Potri.012G056200.1 pacid=42783589 polypeptide=Potri.012G056200.1.p locus=Potri.012G056200 ID=Potri.012G056200.1.v4.1 annot-version=v4.1 MTGKPIAGEGLPANLAGMTKNQLYDIMFQMKTLIEQNKQQAKEILIQNPLLTKALFQAQIMLGMVQPPQAIPNIQPAASQQPQLSAQPSRQSNIQAAQTL PGQGALQDQTSVSQSQPPMRKQHQSQPAMSISAPPGPPVNLQSQPLPSHPLHMPQQPKGHVNPQVTPMSVTQPSQLPNLPPASSHSVSQPLPIHQTQMSS VSSQLLLPLQKTGIPHLPLQQPFPSQPRTASVPSFHHQYGQQMGPNMGYQHAGAPHHPSQPMFHSSNKPQSSMGPSFPQGQPPLSIQQPPQSYQAGGSHL GAEYNSQVPTSMQVDRGSSWMSGPPDSSTMTQLAGPPQFNPGQMAQGNQPSRTAPMSSEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	0	1
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	1.73	0.8983
AT3G26990			ENTH/VHS family protein (.1)		Potri.001G325700 [exp]	2.23	0.9047
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.006G279800 [exp]	3.74	0.9047
AT1G27090			glycine-rich protein (.1)		Potri.010G034900 [exp]	8.48	0.8728
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	9.79	0.8572
AT1G12830			unknown protein		Potri.001G323000 [exp]	11.53	0.8719
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	11.66	0.8918	ELF5.2
AT1G19370			unknown protein		Potri.014G180900 [exp]	11.87	0.8114
AT1G32730			unknown protein		Potri.001G148500 [exp]	12.68	0.8685
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	13.41	0.8547

Compare expression of checked genes

Potri.012G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.