Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63640 857 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 727 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 663 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 653 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 495 / 1e-157 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 474 / 6e-151 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 462 / 5e-146 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 420 / 3e-130 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 381 / 1e-116 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G72250 312 / 2e-89 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047400 [exp] 1614 / 0 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G104000 [exp] 915 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 895 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 535 / 3e-172 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 527 / 2e-169 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 488 / 2e-155 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 481 / 6e-153 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.002G201000 [exp] 474 / 2e-150 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 470 / 7e-149 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032264 [exp] 791 / 0 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 784 / 0 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 753 / 0 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 517 / 3e-165 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 469 / 1e-148 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 458 / 5e-144 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10015212 [exp] 454 / 5e-144 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 454 / 2e-143 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 421 / 2e-130 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 417 / 2e-129 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.012G056700.2 pacid=42784130 polypeptide=Potri.012G056700.2.p locus=Potri.012G056700 ID=Potri.012G056700.2.v4.1 annot-version=v4.1 ATGAATTCAGCTTCGGATCACCTCATAGCACAACACAGGAGAGTCAATAGCTCAAGGATATCTGGTGGTTCGGAAGTTTTCGACCCTACTGTAATTTATA ACAAAGACATTGAAGCCAATCAGCGAGCGATATTGGTGGAGTGGATGAATAGTACTGTTCCTAGTTTAAATTTTCCAGTAAAAGCCTCATCCGAGCAGTT GAGGACCTGTTTGATTGATGGGACTGTTCTACTACAGATTTTAAATAGGCTTAGACCTGGTTTTTCGTACAAGGAAGGTAGTTCTCGCTCAGAAAATGTT AAGAAGTTTCTGGCATGCATGGATGAGCTGGGAATTCTCAAGTTCGAACTGTCGGACCTGGAGACGGGATCCATGAAGAATGTTATGGATTGCCTTTCAA CACTTCGAGCACAATTTGCATATTTGGGAGGTAATCTCTCACCCACAAGTGGGATTACTAGATTTGGCAGTCCTCGAGGGGATGCATCTTCCAATGGCCA TTTTTCTCCAACATTTGGGGAAGAAAAGCGGAAGTTTTCCCCAGAGTCTAAATCTCAACATGCTTTAGAGCCGTCAGCTGCATCCATGCACCATGTTGGA CATAAATTCCATGAGGTGTTTCAACTGAAACAAGGCCGCTTTTCAGAACTTTCTGCTGCAAAAATTTCTGAAATGATGAAATCAAACAGTTTGGATAATT CACCAACTCAGTCGCTTTTGAGTGTTGTCAACGGAATATTGGATGAAAGCATTGAAAGAAAGAGTTACGAAATACCACATCGTGTGGCCTGTCTGTTGAG AAAAGTTTTGCAAGAGATTGAACGACGTATATCAACTCAAGCAGAGCACTTAAGAACTCAAAATAATCTATTCAAAGCTCGTGAGGAGAAGTACCAGTCA AGGATCAGAGTTCTTGAAGCCCTTGCTTCTGGGACTGGTGAAGAAAGAGGGGCTGTTAAGGACCAGCTTCAACATTTAAAGATTGAGAAGTCCAAAATGG AAGGAGAGAAGAGACTTGAAGAGGAGCATGTAGCTAAGTTGATCATAGAGAGGGAGCAAAGAGACCTTGATCTTTCAACCTTAAAACAAGAATTAGAATT AGTGAAAGAGACGCATGAACTACGTCACTTGAAAATGGAAGCAGAAGCCAAGGGTGCTAAAGCAGGCCTTGAGGAGAGATTAAAAGAGCTTGAACTCCAC TTAGAAGATTCCAGGAACCAAGTGAAAGTGCTTTCGGCATATTCAGAGTCAAAATCTATGACGTTCAACGAGAAAGAGGACATTTTTAAGGGCTTTGTTG AGTTTCAATTTGGTGCACTGCAGGGAATGAGGTTTTCTTGCAAGTCCATCAAGCAAGAAATTTTAGAAGTACATAAAAGCTACACAGAGGAATTCAATGG CTTAGAAGTGAAGTTAAAAGCATTAATCGATGCAACCGGGGACTATCACTTTGTCGTTGCTGAAAATAGGAGGATGTTCAATGAGCTTCAGGAATTAAAA GGAAACATCAGAGTTTATTGCCGTATAAGGCCATTTCTTCCAGGGCAGGTTGCAAAACAAACAGCGGTAGAATATATAGGTGAAAATGGAGAGGTGGCTG TTGTGAATCCCTCCAAACAAGGGAAAGATAGACGTCGCAATTTTAAGTTCAATAAGGTCTTTGGTCCAGATTCTACTCAAGCGGAGGTATATTCAGACAC TCAACCATTGATACGCTCTGTACTGGATGGATATAGCGTGTGTATATTTGCTTATGGACAAACTGGTTCAGGAAAAACTTACACAATGACTGGTCCAAAT GGAGCATCTGAGGAGGATTGGGGGGTTAATTATCGGGCTCTAAATGACCTTTTCAAAATTTCTCAGAGCAGAGGAGGCTCCTTTAACTATGAGATTCAGG TTCAGATGGTTGAAATATATAACGAACAAGTGCATGATTTACTGTTGATCGATGGTTCTCAGAAAAACCTTGGGATTAAGTCTACTGTCCAAACCAATGG TTTGGCTGTACCAGATGCTAGCATGCATCCTGTTACATCAACTTCAGACGTTTTAGAATTAATGGATATTGGACTAAGAAACAGAGCTGTTGGGGCTACT TCCATGAATGAAAGAAGCAGCCGCTCTCACAGTGTTGTCAGTATCCATGTTCGTGGAAAGGATTTGCATTCTGGGGCTGCTTTACATGGTAATCTTCATT TGGTGGATCTAGCAGGGAGCGAAAGGGTAGATCGCTCTGAGGCAACTGGAGATAGACTTAGAGAAGCACAACATATAAACAGATCATTATCTGCCCTTGG GGATGTTATATTCGCTCTGGCACAAAAGAATTCTCATGTACCATACAGAAACAGCAAGCTCACTCAACTACTGCAAAGCTCTTTAGGAGGTCAAGCAAAG ACGCTTATGTTTGTACAGCTCAATCCTGATGTCATTTCATATTCAGAAACTATAAGCACTCTGAAGTTTGCAGAGAGGGTCTCTGGAGTTGAGCTAGGTG CAGCACGAAGCAGCAAAGAGGGCAGAGATGCTAGGGAATTAATGGACCAGGTGGCATCTCTCAAAGACACGATTGCCAAAAAAGATGATGAAATTGAGCA GTTGGAATTACGTAAAGATATCAAAAACGAGTATCCTGGCTCACTGAGGTATGGGAATTCCTCAGCAAGCGATGATTTTTCAGGTGTTAATCCTCATAGA ACCCAAAAACCATCGATCAGGAAAAGCATGGGAAATGAGACAGTTTCTTATCAGGAAAGCAATCCAGAGCATAGTGACAGGCATTCTGAAGCTGGTTCCC AGCAATCAAAACTTTCTGAAAGGGACACAGGTCAGGATATGTCATTTGCAGATGCTAAGATATTTCGATTTGGAGATGGAGGCTGTGAGGATAGATTAAG TGACATTTCTGATGGTGCTCTTTCAGTGGGAGAAGAACCTGATGGCGAAACAGATCAAGGCACAAAGCTATCAAATAAATTGCGGAAGAGTACTAGCATG GCATCAACTTCTCGACTCTTACAAAACCAAGCACAGGCCACATCAAGGACAGCGACTGTGTCAACGGACTCCCCAAAAGGGTCAACAAGTATTAAGAAAA CTGGCAATTCCAACTTGGTCAAGTCTTCAAAGCGATGGCAGTAA
AA sequence Show only first row Show all	>Potri.012G056700.2 pacid=42784130 polypeptide=Potri.012G056700.2.p locus=Potri.012G056700 ID=Potri.012G056700.2.v4.1 annot-version=v4.1 MNSASDHLIAQHRRVNSSRISGGSEVFDPTVIYNKDIEANQRAILVEWMNSTVPSLNFPVKASSEQLRTCLIDGTVLLQILNRLRPGFSYKEGSSRSENV KKFLACMDELGILKFELSDLETGSMKNVMDCLSTLRAQFAYLGGNLSPTSGITRFGSPRGDASSNGHFSPTFGEEKRKFSPESKSQHALEPSAASMHHVG HKFHEVFQLKQGRFSELSAAKISEMMKSNSLDNSPTQSLLSVVNGILDESIERKSYEIPHRVACLLRKVLQEIERRISTQAEHLRTQNNLFKAREEKYQS RIRVLEALASGTGEERGAVKDQLQHLKIEKSKMEGEKRLEEEHVAKLIIEREQRDLDLSTLKQELELVKETHELRHLKMEAEAKGAKAGLEERLKELELH LEDSRNQVKVLSAYSESKSMTFNEKEDIFKGFVEFQFGALQGMRFSCKSIKQEILEVHKSYTEEFNGLEVKLKALIDATGDYHFVVAENRRMFNELQELK GNIRVYCRIRPFLPGQVAKQTAVEYIGENGEVAVVNPSKQGKDRRRNFKFNKVFGPDSTQAEVYSDTQPLIRSVLDGYSVCIFAYGQTGSGKTYTMTGPN GASEEDWGVNYRALNDLFKISQSRGGSFNYEIQVQMVEIYNEQVHDLLLIDGSQKNLGIKSTVQTNGLAVPDASMHPVTSTSDVLELMDIGLRNRAVGAT SMNERSSRSHSVVSIHVRGKDLHSGAALHGNLHLVDLAGSERVDRSEATGDRLREAQHINRSLSALGDVIFALAQKNSHVPYRNSKLTQLLQSSLGGQAK TLMFVQLNPDVISYSETISTLKFAERVSGVELGAARSSKEGRDARELMDQVASLKDTIAKKDDEIEQLELRKDIKNEYPGSLRYGNSSASDDFSGVNPHR TQKPSIRKSMGNETVSYQESNPEHSDRHSEAGSQQSKLSERDTGQDMSFADAKIFRFGDGGCEDRLSDISDGALSVGEEPDGETDQGTKLSNKLRKSTSM ASTSRLLQNQAQATSRTATVSTDSPKGSTSIKKTGNSNLVKSSKRWQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63640			P-loop nucleoside triphosphate...		Potri.012G056700 [exp]	0	1
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.008G167700 [exp]	11.48	0.5138
					Potri.010G112101 [exp]	13.41	0.4993
					Potri.016G052750 [exp]	13.85	0.4443
AT3G51710			D-mannose binding lectin prote...		Potri.016G132500 [exp]	24.81	0.4753
AT1G21280			unknown protein		Potri.013G016350 [exp]	25.92	0.5026
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019700 [exp]	43.41	0.4731
AT5G09430			alpha/beta-Hydrolases superfam...		Potri.001G313100 [exp]	56.68	0.4402
					Potri.001G053450 [exp]	61.98	0.4318
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.006G003700 [exp]	65.38	0.4525
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	76.99	0.4162

Compare expression of checked genes

Potri.012G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.