Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02550 189 / 4e-59 AS2 LBD41 LOB domain-containing protein 41 (.1) AT1G67100 176 / 2e-54 AS2 LBD40 LOB domain-containing protein 40 (.1) AT1G68510 168 / 2e-51 AS2 LBD42 LOB domain-containing protein 42 (.1) AT5G67420 145 / 4e-42 AS2 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) AT3G49940 141 / 9e-41 AS2 LBD38 LOB domain-containing protein 38 (.1) AT4G37540 139 / 3e-40 AS2 LBD39 LOB domain-containing protein 39 (.1) AT2G28500 47 / 5e-06 AS2 LBD11 LOB domain-containing protein 11 (.1) AT4G00220 45 / 1e-05 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT2G31310 45 / 2e-05 AS2 LBD14 LOB domain-containing protein 14 (.1) AT2G30130 44 / 4e-05 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120600 [exp] 212 / 2e-68 AT1G68510 228 / 3e-75 LOB domain-containing protein 42 (.1) Potri.017G114500 [exp] 201 / 2e-63 AT3G02550 291 / 5e-99 LOB domain-containing protein 41 (.1) Potri.010G125000 [exp] 196 / 2e-62 AT1G68510 220 / 2e-72 LOB domain-containing protein 42 (.1) Potri.004G100100 [exp] 197 / 4e-62 AT3G02550 277 / 2e-93 LOB domain-containing protein 41 (.1) Potri.007G053600 [exp] 145 / 2e-42 AT3G49940 263 / 3e-89 LOB domain-containing protein 38 (.1) Potri.005G145500 [exp] 143 / 1e-41 AT5G67420 244 / 2e-81 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Potri.014G017400 [exp] 136 / 2e-39 AT4G37540 196 / 4e-63 LOB domain-containing protein 39 (.1) Potri.002G119400 [exp] 133 / 3e-38 AT3G49940 198 / 5e-64 LOB domain-containing protein 38 (.1) Potri.009G089600 [exp] 126 / 2e-35 AT3G49940 195 / 7e-63 LOB domain-containing protein 38 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028470 [exp] 167 / 1e-52 AT1G67100 205 / 2e-68 LOB domain-containing protein 40 (.1) Lus10019292 [exp] 139 / 9e-40 AT3G49940 259 / 8e-87 LOB domain-containing protein 38 (.1) Lus10011530 [exp] 139 / 1e-39 AT3G49940 260 / 2e-87 LOB domain-containing protein 38 (.1) Lus10018697 [exp] 132 / 1e-37 AT5G67420 190 / 9e-61 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Lus10007758 [exp] 130 / 2e-36 AT3G49940 191 / 1e-60 LOB domain-containing protein 38 (.1) Lus10011645 [exp] 51 / 2e-07 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10036130 [exp] 50 / 7e-07 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10018275 [exp] 45 / 2e-05 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10040638 [exp] 45 / 2e-05 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10040373 [exp] 45 / 3e-05 AT2G28500 211 / 7e-69 LOB domain-containing protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.012G056800.1 pacid=42783512 polypeptide=Potri.012G056800.1.p locus=Potri.012G056800 ID=Potri.012G056800.1.v4.1 annot-version=v4.1 ATGCCCTTTTCAGCCCTTTCTTTTTCATCACTCCCACATAGAATTATCCTTCTTCTTATCGGATTTCTCAATTCATCTCCTTCACTCTCTCGTCATTTCT CAATTTCTTTCCGAACTGAGTACACCATGCGGATGAGTTGTAATGGTTGCAGAATCCTTCGCAAGGGCTGTGGTGATAATTGTAGTATAAAACCTTGCCT TCAATGGATTGAAACTCCCGATTCCCAAGCCAATGCCACCCTCTTCCTTGCTAAATTCTACGGTCGTGCTGGACTCATGAACCTCATCAATGCTTGCCCT CAGCATCTCCGTCCAGATACGTTTAAGTCCTTATTATACGAGGCATGTGGGCGGATTGTGAATCCAGTTTCGGGATCAGTCGGGTTGTTAAGCACCGGGT CATGGCAGCAATGTCAAGCCGCCGTGGAAGCCGTTCTGAAAGGCGAGCCCATCACTCAAATTGCATCAACTGATCAGCTTACACTAGGCGGCTCTGATAC GCGCCACGTGTCAAGAGAGGAGGACTGGTCTGCATCTGATCAGCCCCGTAAAATCAAGTCCAAGCGTCAATTCAATCGATCAACTTCAAAGCGGAAGTCG AGCAGGACTGAGGCTGAGCACACATGTTTCGAGTTCATGATTGGATTTGATGGCTTGCGGTCAGTGAGTCCTGACTCTGTGTTGAGTTGGCGTCCGACTT TGGGGTCTGACAATGAGGAAACTGACAGTATAGGGTCTGTGGAGACTGTAGAGGCTTCTAAGCTTGATGAGCCAGCCGAAGGAAGTGATTTGGATTTAGA CTTGACCTTGGGTCATTATTGA
AA sequence Show only first row Show all	>Potri.012G056800.1 pacid=42783512 polypeptide=Potri.012G056800.1.p locus=Potri.012G056800 ID=Potri.012G056800.1.v4.1 annot-version=v4.1 MPFSALSFSSLPHRIILLLIGFLNSSPSLSRHFSISFRTEYTMRMSCNGCRILRKGCGDNCSIKPCLQWIETPDSQANATLFLAKFYGRAGLMNLINACP QHLRPDTFKSLLYEACGRIVNPVSGSVGLLSTGSWQQCQAAVEAVLKGEPITQIASTDQLTLGGSDTRHVSREEDWSASDQPRKIKSKRQFNRSTSKRKS SRTEAEHTCFEFMIGFDGLRSVSPDSVLSWRPTLGSDNEETDSIGSVETVEASKLDEPAEGSDLDLDLTLGHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.012G056800 [exp]	0	1
AT5G47550			Cystatin/monellin superfamily ...		Potri.006G014500 [exp]	2.44	0.7614	Pt-API.1
AT2G44310			Calcium-binding EF-hand family...		Potri.014G161200 [exp]	4.12	0.8250
AT4G10270			Wound-responsive family protei...		Potri.019G117500 [exp]	8.36	0.7632
AT1G76550			Phosphofructokinase family pro...		Potri.002G003100 [exp]	9.16	0.6694
AT2G20562			unknown protein		Potri.011G114600 [exp]	9.48	0.7208
AT4G10265			Wound-responsive family protei...		Potri.019G117566 [exp]	12.64	0.7459
AT3G10040	Trihelix		sequence-specific DNA binding ...		Potri.006G117500 [exp]	14.49	0.7394
AT5G08570			Pyruvate kinase family protein...		Potri.008G002500 [exp]	17.49	0.6439
AT4G20400		PKDM7B, JMJ14	JUMONJI 14 (.1.2)		Potri.011G155100 [exp]	17.74	0.6435
AT4G10270			Wound-responsive family protei...		Potri.019G117632 [exp]	20.14	0.7393

Compare expression of checked genes

Potri.012G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.