Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73875 503 / 9e-177 DNAse I-like superfamily protein (.1) AT3G18500 353 / 5e-118 DNAse I-like superfamily protein (.1.2.3) AT5G11350 201 / 5e-57 DNAse I-like superfamily protein (.1) AT3G58580 117 / 6e-28 DNAse I-like superfamily protein (.1) AT3G58560 111 / 4e-26 DNAse I-like superfamily protein (.1) AT1G31500 84 / 2e-17 DNAse I-like superfamily protein (.1.2.3.4) AT1G31530 57 / 1e-08 DNAse I-like superfamily protein (.1) AT1G02270 46 / 3e-05 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032300 [exp] 218 / 4e-63 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 107 / 1e-24 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 105 / 6e-24 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 83 / 6e-17 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.002G182500 [exp] 42 / 0.0005 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032490 [exp] 517 / 0 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10014775 [exp] 334 / 8e-111 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10036357 [exp] 334 / 1e-110 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10013119 [exp] 214 / 7e-62 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 208 / 7e-60 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 110 / 8e-26 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 110 / 1e-25 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 110 / 1e-25 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 110 / 2e-25 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10026203 [exp] 88 / 7e-19 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.012G057100.1 pacid=42783765 polypeptide=Potri.012G057100.1.p locus=Potri.012G057100 ID=Potri.012G057100.1.v4.1 annot-version=v4.1 ATGAGATCCCTAAACCACCGAGCTCCAGCGACGGAGCTCACAAGCGCCACCTCGAAATACAAACGTAAGCATCCCTTTCATAAAAAACGACAATACCATC ACAGAAAGAAGCAAAAATCAGTCTCCAAAATTGAGAAAACCCTAACTCTTAAACCTCATAACTCAAATCAAAACTCAGTCTCTTTATCAAATAGATTCCA ATCAATTCAGCGCAAGAAAAGTCATAATTACGACAGTAATTTTGAATATAACCGCAAGTGGACCTTCTCTTGTCATGATTCCCCAGCTTATGAAGATAGA GTAGTGTTTGTTTCATACAATATATTAGGTGTTGAAAATGCATCAAAGCATCCGGATTTATATTTCAAAATTCCGTTGGAATTCATGGAATGGGAACGGC GAAAAGAGCTTATATGTAAGGAGATGCATCACTACAATGCAGGGATACTCTGTTTTCAGGAAGTCGATCGTTTCGATGATTTAGATGATCTTCTACAGAA GGATGGGTTTAGAGGTGTTTACAAGGCTCGAACGGGCGAAGCATGTGATGGGTGTGCTGTATTTTGGAAAGATAAATTATTCACCCTCTTGCATGAAGAA CATATTGAGTTCCAGAGTTTTGGCCTTCGAAATAATGTTGCTCAATTTTGTGTTTTAAAGATGAATGAAAATCAATCGGGGACTGGCTTGTGTACAGAAG CATCAAAGACAATATCCCCAAAAAGGCGAAGCTTAGTGGTTGGAAATATACATGTACTCTTCAACCCAAACCGTGGAGATATCAAGCTAGGTCAGGTTCG AATATTTCTTGAAAAAGCCTACAAATTATCACAAGAATGGGGCAACATACCTATTATAATTGGTGGGGATCTAAATAGCTTACCACAGAGTGCTATTTAT CAGTTTCTCACTGCTTCTGAGTTGGAAATCCTGCTACATGACCGTAGGAATATTTCTGGGCAGCTTGAATGTCCACCACAGCAGAAAGACTTGAGATCCC AGGATGAAAATGTGGCGAGGTCATTGATTTATAGATGGAGTGATGAAGAATTAAGACTAGCAACTGGCAGTGAAGAACTCACACGTCTTCAACACGAATT AAAACTCTATAGTGCATATCTTGGGGTTCCGGGGAGCCATGGCTTGAGAGACAACCGAGGAGAACCCTTGGCAACTTCGTACCACTCCAAGTTTATGGGA ACTGTTGATTACATATGGCATACAAAGGGACTTATTCCTGTGAGAGTTCTTGAAACCTTACCAATTAATATTTTGAGAAGAAGTGCAGGGCTTCCCAATG AGAAATGGGGAAGTGATCATCTTGCTCTTGTATGCGAACTGGCTTTTGCAAATGATGGCACTATTGTCTGA
AA sequence Show only first row Show all	>Potri.012G057100.1 pacid=42783765 polypeptide=Potri.012G057100.1.p locus=Potri.012G057100 ID=Potri.012G057100.1.v4.1 annot-version=v4.1 MRSLNHRAPATELTSATSKYKRKHPFHKKRQYHHRKKQKSVSKIEKTLTLKPHNSNQNSVSLSNRFQSIQRKKSHNYDSNFEYNRKWTFSCHDSPAYEDR VVFVSYNILGVENASKHPDLYFKIPLEFMEWERRKELICKEMHHYNAGILCFQEVDRFDDLDDLLQKDGFRGVYKARTGEACDGCAVFWKDKLFTLLHEE HIEFQSFGLRNNVAQFCVLKMNENQSGTGLCTEASKTISPKRRSLVVGNIHVLFNPNRGDIKLGQVRIFLEKAYKLSQEWGNIPIIIGGDLNSLPQSAIY QFLTASELEILLHDRRNISGQLECPPQQKDLRSQDENVARSLIYRWSDEELRLATGSEELTRLQHELKLYSAYLGVPGSHGLRDNRGEPLATSYHSKFMG TVDYIWHTKGLIPVRVLETLPINILRRSAGLPNEKWGSDHLALVCELAFANDGTIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73875			DNAse I-like superfamily prote...		Potri.012G057100 [exp]	0	1
AT3G53270			Small nuclear RNA activating c...		Potri.004G126760 [exp]	2.00	0.9224
AT5G24450			Transcription factor IIIC, sub...		Potri.007G145000 [exp]	4.24	0.8728
					Potri.010G026350 [exp]	5.65	0.8399
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	10.72	0.8351
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	11.48	0.8061	Pt-MRE11.1
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090766 [exp]	12.12	0.8291
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G262866 [exp]	12.24	0.8219
AT5G24490			30S ribosomal protein, putativ...		Potri.011G054700 [exp]	13.41	0.7920
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	13.85	0.7694
AT5G15400			U-box domain-containing protei...		Potri.004G121200 [exp]	14.42	0.7471

Compare expression of checked genes

Potri.012G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.