Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08160 610 / 0 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G32850 111 / 1e-26 Protein kinase superfamily protein (.1.2) AT4G04710 68 / 3e-12 CPK22 calcium-dependent protein kinase 22 (.1) AT2G23770 61 / 6e-10 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G25880 57 / 4e-09 ATAUR2 ataurora2 (.1.2) AT3G51850 58 / 5e-09 CPK13 calcium-dependent protein kinase 13 (.1) AT3G10540 57 / 7e-09 3-phosphoinositide-dependent protein kinase (.1) AT4G32830 57 / 7e-09 ATAUR1 ataurora1 (.1) AT5G57630 57 / 9e-09 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) AT1G18890 57 / 9e-09 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055200 [exp] 656 / 0 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.001G228100 [exp] 115 / 4e-28 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G117200 [exp] 62 / 2e-10 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.012G071700 [exp] 62 / 2e-10 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.010G247400 [exp] 60 / 1e-09 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G101300 [exp] 60 / 1e-09 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G235000 [exp] 58 / 3e-09 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.015G066200 [exp] 58 / 5e-09 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.007G112400 [exp] 57 / 8e-09 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007963 [exp] 613 / 0 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10013493 [exp] 608 / 0 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10034642 [exp] 482 / 3e-172 AT5G08160 499 / 4e-179 serine/threonine protein kinase 3 (.1.2) Lus10035273 [exp] 244 / 2e-79 AT5G08160 238 / 7e-78 serine/threonine protein kinase 3 (.1.2) Lus10003916 [exp] 116 / 1e-28 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 115 / 3e-28 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027808 [exp] 62 / 2e-10 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10004807 [exp] 60 / 1e-09 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10033108 [exp] 59 / 2e-09 AT5G12480 598 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Lus10005487 [exp] 58 / 3e-09 AT4G32830 545 / 0.0 ataurora1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G057300.1 pacid=42784042 polypeptide=Potri.012G057300.1.p locus=Potri.012G057300 ID=Potri.012G057300.1.v4.1 annot-version=v4.1 ATGGGGTGCTCTTTTTCGGGGCTGAATGCATTATACGACGCCGTTAACGGAGGAGGAGATGTGTGGATCAACGAGAACAGATTCAGGATCGTGAGGCAGC TAGGTGAAGGTGGATTTGCCTATGTGTATTTGGTTAAGGAGGTGGTCAACGTCTCTTCTCCTGCTTCTAGTGGTGGTCGTGCTGCTGTCGGCGGTGGCCT CTCTAAAAAAGTCAAGGACAAATCCCATCTCTCTGTTGATGGAACTTATGCTATGAAGAAAGTTCTTATTCAGAATAATGAGCAATTGGAATTTGTGCGG GAAGAGATTCGCGTTTCTTCATTATTCAATCACTCCAATCTGCTTCCTCTGCTTGATCATGCTATTATTTCCGTTAAGGCTACTCAAGAAGGATCTTGGA ACCATGAAGCATATTTGTTATTTCCGGTTCACTTGGATGGAACCTTACTGGACAACTCTGCTGCTATGAAATCTAAAAAGGAATTTTTTTCTACCACAGA TGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGATTGAAAAATATGCACAATCTTGATCCTCCATATGCACACAATGATGTCAAACCTGGTAATGTTCTC CTGACACATAGGAAAGGACATTCACCTCTTGCTATATTGATGGATTTTGGGAGTGCTCGACCTGCAAGGAAGCAAATTCGATCTCGCTCTGAGGCACTAC AGTTGCAGGAATGGGCGTCCGAGCATTGTTCAGCACCCTTCAGAGCTCCTGAGTTGTGGGATTGCCCAAGCCATGCAGACATTGATGAGAGAACTGATAT CTGGTCACTTGGATGCACACTATATGCAATAATGTATGGAGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGAGGAAGCCTTCAATTGGCCATTGTA AATGCACAGATAAAGTGGCCAGCTGGACCCAAACCTCCATATCCAGAAGCTCTTCATCAGTTCGTGACATGGATGCTTCAGCCTCAGGCAGCAGTCCGCC CACACATTGATGATATTATAATTCATGTTGACAAGCTGATCTCAAAGTTTTCAAATTGA
AA sequence Show only first row Show all	>Potri.012G057300.1 pacid=42784042 polypeptide=Potri.012G057300.1.p locus=Potri.012G057300 ID=Potri.012G057300.1.v4.1 annot-version=v4.1 MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKEVVNVSSPASSGGRAAVGGGLSKKVKDKSHLSVDGTYAMKKVLIQNNEQLEFVR EEIRVSSLFNHSNLLPLLDHAIISVKATQEGSWNHEAYLLFPVHLDGTLLDNSAAMKSKKEFFSTTDVLQIFRQLCAGLKNMHNLDPPYAHNDVKPGNVL LTHRKGHSPLAILMDFGSARPARKQIRSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIV NAQIKWPAGPKPPYPEALHQFVTWMLQPQAAVRPHIDDIIIHVDKLISKFSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.012G057300 [exp]	0	1
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.008G118500 [exp]	2.00	0.8914
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.008G075400 [exp]	2.00	0.9135	ASNAP.1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.010G181900 [exp]	7.34	0.8865	ASNAP.3
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Potri.003G038700 [exp]	9.48	0.8874
AT3G13410			unknown protein		Potri.001G000900 [exp]	12.12	0.9017
AT4G12650			Endomembrane protein 70 protei...		Potri.014G172200 [exp]	12.32	0.9048
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	12.68	0.8853
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Potri.010G175000 [exp]	13.96	0.8714
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.002G168100 [exp]	21.67	0.8742
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	24.55	0.8750

Compare expression of checked genes

Potri.012G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.