Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) AT5G39890 212 / 3e-68 Protein of unknown function (DUF1637) (.1) AT2G42670 190 / 5e-60 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT5G15120 191 / 7e-60 Protein of unknown function (DUF1637) (.1) AT3G58670 179 / 1e-55 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055600 [exp] 450 / 4e-162 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.004G129400 [exp] 219 / 4e-71 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 207 / 3e-66 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 204 / 4e-65 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 202 / 1e-64 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.004G058000 [exp] 193 / 2e-61 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 192 / 1e-60 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038962 [exp] 369 / 6e-130 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10027254 [exp] 359 / 7e-126 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10017645 [exp] 198 / 3e-63 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10020711 [exp] 196 / 2e-62 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10015360 [exp] 197 / 6e-62 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10033603 [exp] 194 / 1e-61 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10013620 [exp] 186 / 7e-58 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1) Lus10003861 [exp] 183 / 2e-56 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1) Lus10029828 [exp] 171 / 2e-50 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07847 [poplar] [flax] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Potri.012G057400.2 pacid=42783331 polypeptide=Potri.012G057400.2.p locus=Potri.012G057400 ID=Potri.012G057400.2.v4.1 annot-version=v4.1 ATGGTAGAGCAGCAGAATTCGTCTTCCAAAGTTCAAGCTTTATATGAACTCTGCAAAAAGACCTTTACATCCTCCGGGGTACCTCCTTCCTCTCGTGCCA TCCAGAAACTCTGCTCTCTTTTGGACACGGTTGGCCCTGCTGATGTAGGGCTTAGAGAGGAAAATCGAGATGATGATAGAGGGCATGGCTTTCTTGGACC TAATCGGTTGACCAGGGTTGCTCGATGGGCTCAATCCATAACATACGTAGATATTTTTGAATGTGATAGTTTTACGATGTGTATATTTTGCTTTCCAACT TCTTCCGTTATTCCACTTCATGACCATCCTAGTATGACAGTTTTCAGCAAAGTTCTATATGGCTCTTTGCATGTGAAAGCTTATGATTGGGTTGAGCCTT CCCGTTACCAAAAAAGCAAGGGGCCTGGTTATCCAGCAGTAAGGTTGGCGAAGTTAACAGTTGATAAAGTCTCGACAGCTCCCTGTGGGACGTCAGTATT GTTCCCAAAAAGTGGTGGGAATCTGCATTGTTTCACTGCAGTCACCTCTTGTGCTGTGCTTGACATTCTTACACCTCCTTACAGAGAAGATGCAGGCAGA AAATGTACTTATTACCATGACTATCCTTATTCTACGTCCTCTATAGGAAATGGAGCTGAGTTAAGCGCTGAAAAAATAGATGACCAAGCATGGCTTGCTG AGGTAGAAACACCTGATCTCTATATGCGCCAAGGAGCATACACAGGACCAACTGTCAAGGTTTAA
AA sequence Show only first row Show all	>Potri.012G057400.2 pacid=42783331 polypeptide=Potri.012G057400.2.p locus=Potri.012G057400 ID=Potri.012G057400.2.v4.1 annot-version=v4.1 MVEQQNSSSKVQALYELCKKTFTSSGVPPSSRAIQKLCSLLDTVGPADVGLREENRDDDRGHGFLGPNRLTRVARWAQSITYVDIFECDSFTMCIFCFPT SSVIPLHDHPSMTVFSKVLYGSLHVKAYDWVEPSRYQKSKGPGYPAVRLAKLTVDKVSTAPCGTSVLFPKSGGNLHCFTAVTSCAVLDILTPPYREDAGR KCTYYHDYPYSTSSIGNGAELSAEKIDDQAWLAEVETPDLYMRQGAYTGPTVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18490			Protein of unknown function (D...		Potri.012G057400 [exp]	0	1
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.010G121500 [exp]	3.16	0.6917
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	3.46	0.6669
AT1G19690			NAD(P)-binding Rossmann-fold s...		Potri.002G031500 [exp]	4.89	0.6881
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.015G086600 [exp]	12.84	0.6441
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Potri.008G002400 [exp]	21.90	0.6347
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Potri.015G071900 [exp]	48.21	0.5723
AT3G10160		ATDFC, FPGS2	folylpolyglutamate synthetase ...		Potri.006G045400 [exp]	54.24	0.5805
AT5G57000			unknown protein		Potri.006G148000 [exp]	61.48	0.5658
AT4G22990			Major Facilitator Superfamily ...		Potri.003G120600 [exp]	76.62	0.5500
AT5G13780			Acyl-CoA N-acyltransferases (N...		Potri.009G056600 [exp]	83.06	0.5337	SGB901

Compare expression of checked genes

Potri.012G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.