Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74030 810 / 0 ENO1 enolase 1 (.1) AT2G36530 590 / 0 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) AT2G29560 486 / 2e-169 ENOC cytosolic enolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116800 [exp] 600 / 0 AT2G36530 814 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.015G131100 [exp] 596 / 0 AT2G36530 811 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.009G040700 [exp] 502 / 1e-175 AT2G29560 809 / 0.0 cytosolic enolase (.1) Potri.012G129300 [exp] 199 / 4e-61 AT2G36530 260 / 1e-85 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038963 [exp] 815 / 0 AT1G74030 808 / 0.0 enolase 1 (.1) Lus10027255 [exp] 811 / 0 AT1G74030 799 / 0.0 enolase 1 (.1) Lus10015028 [exp] 588 / 0 AT2G36530 802 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10002844 [exp] 587 / 0 AT2G36530 800 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10003374 [exp] 584 / 0 AT2G36530 799 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038904 [exp] 582 / 0 AT2G36530 792 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10035579 [exp] 552 / 0 AT2G36530 775 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10008647 [exp] 503 / 5e-174 AT2G36530 687 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10040711 [exp] 480 / 2e-166 AT2G29560 789 / 0.0 cytosolic enolase (.1) Lus10016447 [exp] 428 / 5e-146 AT2G29560 713 / 0.0 cytosolic enolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0256 [poplar] [flax] Enolase_TIM PF00113 [poplar] [flax] Enolase_C Enolase, C-terminal TIM barrel domain CL0227 [poplar] [flax] Enolase_N PF03952 [poplar] [flax] Enolase_N Enolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G057500.2 pacid=42784362 polypeptide=Potri.012G057500.2.p locus=Potri.012G057500 ID=Potri.012G057500.2.v4.1 annot-version=v4.1 ATGGCCTTGGCTACACAACCAGCCACCAACTTCTTCAACAAAAAGAACCCTTTACTCAATAGCTTCTCTACAAAACAACCCAAAACATCAACACGGTCTT TAGTTATCAGAAACTCCGTGACTGTGGCTCCACCATCAACGGTCAGGATTGCTAAAGAATGCAAGGTGAAGTCAGTGAAGGCGAGGCAGATCATTGATAG CAGAGGGAATCCTACCGTTGAGGTTGATCTCGTCACTGATGATCAGCTTTACCGATCGGCTGTACCAAGTGGGGCTTCTACTGGGATCTATGAGGCTTTG GAACTTAGAGATGGAGATAAAAGTGTTTATGGTGGCAAGGGTGTGCTTAGTGCTGTTCAAAATGTTAATAACTTTTTGGGTCCTAAGCTTCTTGGTGTTG ATGTCAGAAATCAAGCTGATGTGGATGCTATAATGCTGGATATTGATGGAACTCCAAATAAGGCAAAATTGGGTGCTAATGCTATTCTTGGAGTATCCCT GAGTGTGTGCCGGGCTGGTGCAGGGGCCAAGGGAGTTCCATTGTATAAACACATCCAGGAAATATCAGGAACCAAGGAGCTTGTTATGCCTGTTCCAGCT TTTAATGTCATTAATGGAGGCAGTCACGCTGGAAATAATCTGGCCATGCAAGAATTTATGATTCTGCCTGTAGGTGCGACCAATTTCGCCGAAGCACTCC GAATGGGCAGCGAAGTGTATCATACACTGAAGAAAATTATTGAGAAAAAATATGGACAAGATGCTTGCAATGTTGGAGACGAGGGGGGATTTGCTCCCAA TGTTCAGGATAACAGGGAAGGACTAGTTTTGCTCATGGATGCGATTGAAAAGGCTGGATACACAGGAAAGATCAAGATAGGAATGGACGTTGCTGCTTCA GAGTTTCTCAAAGATGGAAAATATGATTTGAACTTTAAAAACCAACCAAATGATGGAGCTCATGTGCTCTCAGCCCAAAGCCTTGGTGACCTCTACAAGG ATTTTGTCAAGGAATTCCCTATTGTGTCTATTGAAGATCCCTTTGACCAGGATGATTGGAATTCATGGGCTTCACTACAATCTTCAGTTGATATCCAGAT TGTTGGAGATGATTTGTTGGTCACAAATCCAAAGAGAATCGCTGAGGCAATTCAGAAAAAGGCTTGCAATGGCTTGCTACTGAAGGTTAACCAGATAGGT ACAGTGACTGAATCCATTAGAGCAGCACTTGACTCCAAAGCTGCAGGTTGGGGTGTGATGGTCAGCCATCGTAGTGGTGAAACTGAGGATAACTTCATAG CTGATCTTTCTGTTGGCTTGGCCAGTGGACAGATCAAGACTGGAGCTCCTTGCAGAAGTGAGCGGTTGGCCAAGTATAATCAGCTTCTGCGCATTGAAGA GGAACTTGGAAATGTGCGATATGCTGGTGAAGCTTTCAGATCCCTTTAA
AA sequence Show only first row Show all	>Potri.012G057500.2 pacid=42784362 polypeptide=Potri.012G057500.2.p locus=Potri.012G057500 ID=Potri.012G057500.2.v4.1 annot-version=v4.1 MALATQPATNFFNKKNPLLNSFSTKQPKTSTRSLVIRNSVTVAPPSTVRIAKECKVKSVKARQIIDSRGNPTVEVDLVTDDQLYRSAVPSGASTGIYEAL ELRDGDKSVYGGKGVLSAVQNVNNFLGPKLLGVDVRNQADVDAIMLDIDGTPNKAKLGANAILGVSLSVCRAGAGAKGVPLYKHIQEISGTKELVMPVPA FNVINGGSHAGNNLAMQEFMILPVGATNFAEALRMGSEVYHTLKKIIEKKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYTGKIKIGMDVAAS EFLKDGKYDLNFKNQPNDGAHVLSAQSLGDLYKDFVKEFPIVSIEDPFDQDDWNSWASLQSSVDIQIVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQIG TVTESIRAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGNVRYAGEAFRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74030		ENO1	enolase 1 (.1)		Potri.012G057500 [exp]	0	1
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.010G172400 [exp]	1.00	0.7805
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Potri.016G056200 [exp]	7.74	0.7031	Pt-VLN2.2
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.008G147800 [exp]	10.77	0.7614
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	12.32	0.7240
AT3G46450			SEC14 cytosolic factor family ...		Potri.009G028700 [exp]	14.31	0.6408
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.012G075500 [exp]	15.87	0.7389
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	15.96	0.6761
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.006G003400 [exp]	21.09	0.7198	Pt-FPS1.2
AT5G13500			unknown protein		Potri.001G275600 [exp]	22.24	0.6369
AT1G31830			Amino acid permease family pro...		Potri.004G178000 [exp]	25.86	0.5696

Compare expression of checked genes

Potri.012G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.