Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57300 39 / 0.0005 ATINO80 INO80 ortholog (.1.2) AT3G12810 0 / 1 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022100 [exp] 0 / 1 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.001G207700 [exp] 0 / 1 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031050 [exp] 39 / 0.0005 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10035436 [exp] 38 / 0.0006 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10002974 [exp] 0 / 1 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G057601.1 pacid=42784165 polypeptide=Potri.012G057601.1.p locus=Potri.012G057601 ID=Potri.012G057601.1.v4.1 annot-version=v4.1 ATGGAAGGAGCTTGGTTTCAGCCAACCTTACCTCTTGCATTTACAGTCTTTTGCACTGCCAAAATATGCTACAATCTTGAAGGCAGGACACCATTTAAGA AACTCTGTTTCCCAGTCAAGCTTGACACTTGTAGCCTTGTAGGAACCACAATGAGACGAGGACCCCATATTCCCTTTCCACATGCCAGGTGTGCTAGCAA AGCCATAGCCATGATTGTCTTTCCAATTCCCGTTGCATCAGCTAGAACCTTTTCTCATACACGGAAGCAAGCCAGTCAAGGCCTACGTGCTGATATTCAG GAAGAGGGTACTTCAGAAGAAAAGGGAAAAAAAGGAACCATGTTCTGA
AA sequence Show only first row Show all	>Potri.012G057601.1 pacid=42784165 polypeptide=Potri.012G057601.1.p locus=Potri.012G057601 ID=Potri.012G057601.1.v4.1 annot-version=v4.1 MEGAWFQPTLPLAFTVFCTAKICYNLEGRTPFKKLCFPVKLDTCSLVGTTMRRGPHIPFPHARCASKAIAMIVFPIPVASARTFSHTRKQASQGLRADIQ EEGTSEEKGKKGTMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	0	1
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	2.00	0.9246
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	4.47	0.9031
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	5.47	0.8927
					Potri.010G122150 [exp]	5.91	0.9135
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.008G037700 [exp]	6.48	0.9051
					Potri.010G065733 [exp]	7.74	0.9016
AT5G09995			unknown protein		Potri.007G081800 [exp]	8.94	0.8734
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016122 [exp]	9.00	0.8582
					Potri.005G152000 [exp]	9.48	0.9041
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	11.48	0.8692

Compare expression of checked genes

Potri.012G057601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.