Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23040 317 / 2e-109 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT3G51140 134 / 1e-37 Protein of unknown function (DUF3353) (.1) AT2G20920 44 / 4e-05 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015600 [exp] 138 / 3e-39 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1) Potri.004G177300 [exp] 44 / 5e-05 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000868 [exp] 312 / 2e-107 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10038965 [exp] 310 / 9e-107 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 290 / 1e-99 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10027257 [exp] 293 / 3e-92 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10041816 [exp] 137 / 3e-38 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1) Lus10005055 [exp] 44 / 6e-05 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 44 / 6e-05 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 43 / 0.0002 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [poplar] [flax] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Potri.012G057700.1 pacid=42783259 polypeptide=Potri.012G057700.1.p locus=Potri.012G057700 ID=Potri.012G057700.1.v4.1 annot-version=v4.1 ATGGTTTGTTCTCTGTTTCTCTCAAATTCTAGTACTGCTACAACCATCTCCTCTCCTTTAGTCCTTTCCCATAAACTAAGATGTACACAAGAACACACAA AAAAAGGAATATATTTCTCCACCCCAATTTCAAGAAGCCCTAGAATTGGCCTTGCCAGCATTAAATGTGCTGTGGATGCACCTTATGAAGGTAACATCCC AAAATTTCCTCGGATGAATGTTTGGGATCCTTATAAGCGTCTTGGTATCAGTCCCTATGCATCTGAAGAGGAAATTTGGAGTTCCCGCAATTTTCTCATG CAACAATATGCTGGGCATGAAACAAGTGAAGAATCAATAGAAGCTGCCTTTGAGAAACTGTTGATGACTAGCTTTAGAGAGAGGAAAAAAACAAAAATTA ATTTGAAAACCAGGCTAAAGAAGAAGGTGGAGGAGTCTCCTCCTTGGGTTAAGAATTTACTCGATTTTGTGGAACTTCCTCCAGTGGAAGTCATTTTTAG GAGATTGTTCCTCTTTGCATTTATGGGTGGCTGGAGTATCATGAATTCTGCGGAAGGGGGTCCTGCTTTCCAGGTCGCAGTCTCTTTGGCAGCTTGCATA TATTTCCTCAATGAGAAGACGAAGAGCTTGGGCAGAGCTTTCATTATTGGGCTTGGAGCTCTTGCAGCTGGGTGGGTATGTGGTTCTGTATGTGTCCCCG TGATTCCAACAGTTATAATACCCCCAACTTGGACGCTCGAACTCATGACATCTTTGGTATCATATCTTTTCTTGTTTCTCGGATGTACTTTTCTCAAGTG A
AA sequence Show only first row Show all	>Potri.012G057700.1 pacid=42783259 polypeptide=Potri.012G057700.1.p locus=Potri.012G057700 ID=Potri.012G057700.1.v4.1 annot-version=v4.1 MVCSLFLSNSSTATTISSPLVLSHKLRCTQEHTKKGIYFSTPISRSPRIGLASIKCAVDAPYEGNIPKFPRMNVWDPYKRLGISPYASEEEIWSSRNFLM QQYAGHETSEESIEAAFEKLLMTSFRERKKTKINLKTRLKKKVEESPPWVKNLLDFVELPPVEVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACI YFLNEKTKSLGRAFIIGLGALAAGWVCGSVCVPVIPTVIIPPTWTLELMTSLVSYLFLFLGCTFLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Potri.012G057700 [exp]	0	1
					Potri.017G154900 [exp]	4.00	0.9540
AT4G21860		MSRB2	methionine sulfoxide reductase...		Potri.009G080700 [exp]	5.65	0.9587
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Potri.014G140400 [exp]	6.16	0.9634
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.002G192200 [exp]	6.32	0.9426	Pt-NFU1.2
AT3G54210			Ribosomal protein L17 family p...		Potri.006G113500 [exp]	6.78	0.9666
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Potri.001G091300 [exp]	8.48	0.9484
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Potri.008G146700 [exp]	9.48	0.9614
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	12.00	0.9627
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.018G038900 [exp]	12.80	0.9618
AT1G21065			unknown protein		Potri.002G001500 [exp]	17.43	0.9344

Compare expression of checked genes

Potri.012G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.