Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALA9.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68710 1765 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1748 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1722 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 1686 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 1573 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 1361 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1353 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1348 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1328 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 962 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111200 [exp] 1693 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1674 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1526 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1366 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1348 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1242 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 958 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 954 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 672 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019152 [exp] 1785 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1716 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1592 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1585 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1363 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1358 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1354 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1348 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1282 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 966 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G058000.2 pacid=42782827 polypeptide=Potri.012G058000.2.p locus=Potri.012G058000 ID=Potri.012G058000.2.v4.1 annot-version=v4.1 ATGGCTGGTGGTAGAAGAAAGAAGCAGCGTTTTAGTAGAATCCATGCCTTCCCATGTGGAAGAGCATCATTCAGAAGTGAGCATTCACTGATCGGAGGAC CTGGCTTCTCTAGGATAGTTTATTGCAATGAACCTGAATGCTTTGAGGCTGGTCTGCAAAATTATGCTAGCAACTATGTCAGAACTACCAAGTACACACT CGCAACATTTCTCCCAAAGTCACTATTCGAGCAGTTCCGGCGGGTTGCCAACTTTTATTTCCTCCTCTGTGCAATATTGTCTTTCACTCCACTTTCTCCT TACTCAGCCATCAGCAATGTTGTTCCTCTAGTTGTTGTTATTGGTGCTACAATGGGGAAAGAGGTGATTGAAGATTGGAGGAGAAAAAAGCAGGATATTG AAATGAACAATCGAAAAGTAAAAGTGCATTATGGTGAAGGTGTTTTTGATCACGCTAAATGGATGGATTTGAAAGTCGGGGACATAGTAAGGGTGGAAAA GGATGAATATTTTCCTGCTGATCTCATATTGCTGTCTTCAAGTTATGATGAAGCAATTTGCTATGTTGAGACCACAAACCTTGACGGAGAAACCAATTTG AAACTGAAACAAGCACCAGATGTAACTTCAAACTTGCATGAGGACTCTGGCTTTCAAGATTTTAAGGCTATAATTAGATGTGAAGATCCCAACGCAAATC TGTATTCTTTTATAGGCAGTTTGGATCTGGGAGAGGACCAGCATGCTCTTATGCCTCAGCAACTTCTACTTAGGGACTCAAAGCTGCGAAATACTGATTA CATTTACGGAGTGGTTATCTTCACAGGTCATGATACAAAGGTTATGCAAAATTCAACAGCACCCCCATCTAAGAGAAGCAAAATTGAGAAGAGGATGGAT AAGGTTATCTACCTCTTATTCTTCCTTTTGGTTTTAATTTCGTTTATTGGGTCAATTTTCTTTGGAATTTCAACGAAGGAAGACCTTGAGGATGGAAGGA TGAAAAGATGGTATCTCAGACCTGATAAGACGACAATTTATTATGACCCACATAGAGCACCAGCTGCAGCAATTTTGCATTTTTTTACAGCTCTTATGCT GTATGGTTATTTGATTCCCATTTCCTTGTATGTATCAATCGAAATTGTCAAAGTTCTTCAGAGCATTTTCATCAACCGAGATCTGCATATGTATCATGAG GAAACTGATAAGCCAGCACGGGCACGCACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGACACTATACTTTCTGATAAAACAGGAACATTGACTTGCA ACTCGATGGAATTTATCAAGTGTTCTGTGGCTGGCACATCATATGGTCGTGGAGTAACAGAAGTTGAGAAGGATATGGCTAGAAGAAAGGGGTCACCTTT GCCTCAAGAGGAGACAGAGGAAGAAGACATTGTGGAGGGAGTGGCTGAAGGAAAGCCATCCGTAAAAGGATTCAATTTTGTAGATGAAAGGATCACAAAT GGTCATTGGGTAAATGAACCTCATGCAGATGTAGTCCAAAAGTTCTTAAGATTACTCGCTATCTGCCATACTGCAATACCTGAAATTGATGAAGAAACTG GAAGAATATCATATGAAGCTGAATCACCAGATGAGGCAGCATTTGTCATTGCAGCAAGGGAGCTTGGCTTTAAATTCTATGAAAGAACACAAACAAGCAT CTTACTGCATGAGTTGGATCTGGTCTCTGGCACAAAAGTTGAAAGATCCTATCAACTTTTAAACATCATCGAGTTCAATAGCTCTAGAAAGAGGATGTCT GTTATTGTGAGGAATGAGAAGGGAAAGCTGCTTCTACTTTGTAAAGGGGCTGACAGTGTCATGTTTGAAAGACTTGCAAGGGATGGAAGAGAGTTTGAAG AGCCCACCAGGGAGCACATTGGCGAGTATGCTGATGCTGGCTTGAGGACTTTGGTTCTTGCATATCGTGAACTTGATGAGGAAGAATATGATGAGTTCAA TCATGAATTTACCGAGGCAAAAAACTCATTAAGTGCAGATCGTGAGGATATGATTGAAGAAGTAGCTGAAAAGATTGAGAGGGATTTGATTCTTCTTGGT GCTACAGCTGTTGAGGACAAACTTCAGAATGGGGTTCCTGAGTGTATTGACAAGCTTGCACAAGCGGGAATAAAAATATGGGTTTTAACAGGAGATAAGA TGGAGACAGCCATCAATATTGGCTTTGCCTGTAGTTTACTCAGACAAGGGATGAAGCAAATAATAATCAGTTCAGATACTCCAGAAAACAAAGCTCTAGA GAAAATGGAGGACAAAGCTGCTGGTGTTACGGCTCTCAAGGCAAGCGTCGTCCATCAGATGAATGAAGGGAAGGCGCTGCTTACTGCATCAAGTGAAACT TCTGAGGCACTGGCTTTGATAATTGATGGCAAATCACTCACTTATGCTATCGAAGATGATGTCAAGAACCTGTTTCTGGAGCTTGCTATTGGATGTGCAT CTGTCATTTGCTGCCGATCATCTCCTAAACAGAAAGCTCTTGTTACAAGACTGGTTAAAAGTAAGACAGGTAAAACAACATTAGCAATTGGTGATGGGGC AAATGATGTTGGGATGCTTCAAGAAGCAGATATTGGTGTTGGTATCAGTGGGGTTGAAGGAATGCAGGCAGTCATGTCAAGCGATATTGCAATTGCACAA TTCCGATTTTTGGAGCGCTTGCTACTTGTTCATGGACATTGGTGCTACAGAAGGATCTCATCAATGATATGCTACTTCTTTTACAAGAACATTGCATTTG GGTTCACTCTCTTCTTCTACGAGGCATATGCATCATTCTCAGGCCAACCAGCTTATAATGATTGGTTTCTATCTCTTTATAACGTCTTCTTCACATCACT TCCTGTGATTGCACTTGGAGTGTTTGACCAGGATGTATCTGCCCGATTTTGCCTCAAGTTCCCTCTACTGTACCAAGAAGGTGTACAAAATGTCTTGTTT AGCTGGATCCGAATCTTTGGCTGGGCATTTAATGGTGTATCGAGTGCTGTCTTAATCTTCTTCTTCTGCATCCGTGCAATGGAGCATCAAGCCTTTCGCA AAGGTGGAGAAGTTGTTGGCTTGGAGATCCTTGGTGCCACCATGTATACATGCGTTGTGTGGGTGGTTAACTGCCAGATGGCACTATCTATCAACTATTT CACTTATATACAGCATCTCTTCATCTGGGGTGGAATTGTATTCTGGTACATTTTCCTCATGGTATATGGAGCAATGGATCCATACCTATCAACAACTGCC TATAAAGTTTTCGTCGAAGCCTGTGCACCAGCCCCGTCTTACTGGCTCATCACACTCCTGGTGTTGTTATCCTCACTCATCCCATATTTTATTTACTCGG CCATACAAATGCGTTTCTTTCCCTTGTATCATCAGATGATACACTGGTTAAGAAATGATGGGCAAACGGAGGACCCTGAGTACTGTAATATGGTACGGCA AAGGTCATTGCGACCAACGACAGTAGGTTATACAGCCCGCTATGTAGCGAAATCAAAACGTTTAAAAGAGAAGAAGCACCAGGATAGGTGA
AA sequence Show only first row Show all	>Potri.012G058000.2 pacid=42782827 polypeptide=Potri.012G058000.2.p locus=Potri.012G058000 ID=Potri.012G058000.2.v4.1 annot-version=v4.1 MAGGRRKKQRFSRIHAFPCGRASFRSEHSLIGGPGFSRIVYCNEPECFEAGLQNYASNYVRTTKYTLATFLPKSLFEQFRRVANFYFLLCAILSFTPLSP YSAISNVVPLVVVIGATMGKEVIEDWRRKKQDIEMNNRKVKVHYGEGVFDHAKWMDLKVGDIVRVEKDEYFPADLILLSSSYDEAICYVETTNLDGETNL KLKQAPDVTSNLHEDSGFQDFKAIIRCEDPNANLYSFIGSLDLGEDQHALMPQQLLLRDSKLRNTDYIYGVVIFTGHDTKVMQNSTAPPSKRSKIEKRMD KVIYLLFFLLVLISFIGSIFFGISTKEDLEDGRMKRWYLRPDKTTIYYDPHRAPAAAILHFFTALMLYGYLIPISLYVSIEIVKVLQSIFINRDLHMYHE ETDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTSYGRGVTEVEKDMARRKGSPLPQEETEEEDIVEGVAEGKPSVKGFNFVDERITN GHWVNEPHADVVQKFLRLLAICHTAIPEIDEETGRISYEAESPDEAAFVIAARELGFKFYERTQTSILLHELDLVSGTKVERSYQLLNIIEFNSSRKRMS VIVRNEKGKLLLLCKGADSVMFERLARDGREFEEPTREHIGEYADAGLRTLVLAYRELDEEEYDEFNHEFTEAKNSLSADREDMIEEVAEKIERDLILLG ATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPENKALEKMEDKAAGVTALKASVVHQMNEGKALLTASSET SEALALIIDGKSLTYAIEDDVKNLFLELAIGCASVICCRSSPKQKALVTRLVKSKTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ FRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEAYASFSGQPAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGVQNVLF SWIRIFGWAFNGVSSAVLIFFFCIRAMEHQAFRKGGEVVGLEILGATMYTCVVWVVNCQMALSINYFTYIQHLFIWGGIVFWYIFLMVYGAMDPYLSTTA YKVFVEACAPAPSYWLITLLVLLSSLIPYFIYSAIQMRFFPLYHQMIHWLRNDGQTEDPEYCNMVRQRSLRPTTVGYTARYVAKSKRLKEKKHQDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	0	1	Pt-ALA9.2
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	1.73	0.8853
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	4.47	0.8796
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	6.00	0.8822
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	7.00	0.8776
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	7.34	0.8831
AT4G11140	AP2_ERF	CRF1	cytokinin response factor 1 (....		Potri.003G136300 [exp]	9.79	0.8193	ERF88
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	10.81	0.8822
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074400 [exp]	11.78	0.7848
AT3G51580			unknown protein		Potri.019G058400 [exp]	12.84	0.8676
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	12.96	0.8786	Pt-CRCK3.2

Compare expression of checked genes

Potri.012G058000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.