Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23080 837 / 0 TGH TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279800 [exp] 52 / 2e-06 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.018G002000 [exp] 50 / 5e-06 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000866 [exp] 893 / 0 AT5G23080 829 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10009612 [exp] 885 / 0 AT5G23080 835 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10016927 [exp] 52 / 2e-06 AT4G31200 587 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Lus10008260 [exp] 52 / 3e-06 AT4G31200 586 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [poplar] [flax] Surp Surp module PF07713 [poplar] [flax] DUF1604 Protein of unknown function (DUF1604)
Representative CDS sequence Show only first row Show all	>Potri.012G058100.1 pacid=42784389 polypeptide=Potri.012G058100.1.p locus=Potri.012G058100 ID=Potri.012G058100.1.v4.1 annot-version=v4.1 ATGGATATAGATGAAGATGATTTCGTCTTCTACGGTACACCGATAGAGCGTGAGGAAGAGCTCAACAGTCGCAAGAAAAAAGCCGTCGCTGAAGCTTCCG GCCATCTCCGTACGCTTCCTTCTTGGAAGCAAGAGGTTAGAGATGAAGAAGGAAGGAGAAGATTTCATGGAGCATTTACTGGTGGATTCTCAGCTGGTTA TTACAATACAGCTGGTTCAAAAGAAGGATGGACTCCTCAGTCGTTCACGTCTTCTCGGAAAAATAGAGCTGAATTTAAACAGCAGAGCATGCTCAACTTC TTAGACGAAGATGAGAAAGAGGAATTGGAAGGTCGATCTTTGGGGACGGCGTCCCAGTTTGATACGTTTGGGTTTACAGCTGCTGAAATTGCTCGCAAAC AAGCCGAGAAGGAACAGCAGCAGAGACCTTCTGCTGTTCCTGGACCTGCTCCTGATGAAATAGTTCTTCCAGCCACAGAGTCTATTGGTGTAAAATTGCT TCTGAAGATGGGATGGAGACATGGTCACTCAATCAAGGATTCACACGCAAATTCACTTTACAAGGCTCGTAGAGAAGCAAGAAAAGCTTTCCTAGCATTT TCATCTGATGATGCAAAATCACAGCCTGAAGACTCTGAGCCTGGTGAGGAAGACCACAAAAGCATTTTAGACCACCAGCCTATTGATGATGGTTTCCCCT CTTCTCAAAGCACACCTGTGTATATACTAAACCCAAAGGAGGACACACATGGTTTAGGGTATGATCCCTACAAGCATGCTCCTGAGTTCAGAGAAAAGAA AAGAACACGTGTATCTGGAAAAAGAGGTTCTGGGAATAAACAAGCTTTATCTATCAAAGATAGTCTTTTTGGCTTGAAGTCAGGAAGGGCTGCGCCTGGT TTTGGCATTGGAGCACTTGAAGATTATGATGCCGAAGATGAAGATGTATATGCCACTGCTTATGACATTGAAGATACATATATCCAAGAAGATGAAGAGC CCTTGAGATCCAACACTGAAAATAAGCCAAAATTGGTTTGGAAAGAGCAGGGTGTTCTACCTGGCTTTAAAGTTGCATCGAATTCTGACTACCAGTTGGA GAGATTTGATCCTCCAGTAATTCCAAAGGATTTTTTGCCGCACCATAAATTTCCCGGTCCTCTTGAATTTGACAAGAAGCCTGCCACTCTCTCCCCCCCT CCCCCGGAGGTTCCTCCTCCAGAGGATGATAACTCGAAAGTCTTAATTGAGGGGGTTGCAACTTTAGTTGCTCGATGTGGTAAATTATTTGAAGATCTTT CTAGAGAGAAGAATCAATCAAATCCTTTATTTAGTTTTCTTACTGGAGGAAATGGTCATGACTATTATTCAAGAAAGTTGTGGGAGGAGCAACAGAAACG TAATGGTCAAAAGAAGATCGCTTTGGATGGGAAATTATCTTCAAGTGTGGACAAGATGACTGTAGAGAGCCGTGGCAAAATTTTAGGGGAAATGCCTTTG GAAAGAAGCTCAAGAGATTTAAGTTCATCCATTGCATCTGTAAATGTCAATCTCCCGTTCAATCTTTCAGATACATTTACAAAGCCTGAATCTTCTAGTG AGTTCCCAGAAGTAGCAAAACCATTCCAAGATGATCCTGGAAAGCAAGAAAGATTTGAGCAGTTTCTCAAGGAAAAATACCAAGGAGGGATTCGCTCGAC AGCTTCTGCTGGAGCTAGCAATATGTCGGAAGCAGCTCGTGCACGCGAGAGATTAGATTTTGAGGCTGCAGCTGAGGCAATAGAAAAAGGGAAACTCAAC AAGGAAAACAAACTTAGTCAGCAGCTCATGGCGTTTCCTGCCAGTGGAGGGATGCAATTCACTCTTGGTGGACTACAGCAAGGTAAAGATACTCCGGATG AAGATTTAGCAACTAAGAAAATTTACCCCAGAAGGGAAGAATTTCAATGGCGTCCTTCATCTGTCCTGTGCAAGCGCTTTGATCTAATTGACCCTTCTAT GGGGAAGCCGCCGCCACCTCCACGGATGAGAAGCAAGATGGATTCTCTAATAGTTACATCAGATTTAAAAGCAATGAAAATGGAGGAAGCTTTTAGTGCA GATAGAAATCAACCTTTGGCTCTTCAATTTTCACCTCAAGAAGTAAGCAAAGATGTAGTTGATAGGGAAACTGAACCCGAGGTTCAAGTTGAAAATGTGG AGAGGCCAGTTGACCTCTATAAGGCTATTTTCTCTGATGATTCTGATGATGAGATGGAAGCCTCAAATTTCAACGCAAAGGAGGATCCAGAAAAGAAGAT TGAGGTGGCTCACTCAACATTAAATCGCTTGATGGCTGGTGACTTTCTAGAATCACTGGGGAGAGAACTGGGATTAGAGGTCCCTCCTAATCCACCTTAC TCAACAAATATTGCCAGGTCTTCTCATCAAAAAGAATCTGCAATTGCCAATGCTGGTAATGATAATATCCCGTCAGTTGAAGAAAAATCATTTTCCATTC CTATTGCCCACGGTGTTTCCCAAGAAGAAAGGGTGGCTAATGATGAAAAGACCGCTAAAAAGGGTGAGTCCCGAAAGGATGAACAGCCTAGGCCATCTGA AGACAAATCTGACAAAGTTTATTCAGGAAAGATAGCCCAAGAAGATAAGAAGAAAGCTAAATTGCCTCGTAGTGTCCATAGAAAAAGGAGCAGTACATCA TCAGAAGATGAAAGGAGTAGGAAACGGTCTAGGCGACATCGGGACAGTACTAGTGACTCGTATAGTGATTCATCTAACGATCATCGAGACCGATACCGTT CTAAGTCAAAAGGAAGAAAGAAAAGGTCCTCTCGAGAAAAGAAAAGCAGCAAAAAATATTCTAAACAACATAAGCATGGAAGCAGGGACTCCCAGTAG
AA sequence Show only first row Show all	>Potri.012G058100.1 pacid=42784389 polypeptide=Potri.012G058100.1.p locus=Potri.012G058100 ID=Potri.012G058100.1.v4.1 annot-version=v4.1 MDIDEDDFVFYGTPIEREEELNSRKKKAVAEASGHLRTLPSWKQEVRDEEGRRRFHGAFTGGFSAGYYNTAGSKEGWTPQSFTSSRKNRAEFKQQSMLNF LDEDEKEELEGRSLGTASQFDTFGFTAAEIARKQAEKEQQQRPSAVPGPAPDEIVLPATESIGVKLLLKMGWRHGHSIKDSHANSLYKARREARKAFLAF SSDDAKSQPEDSEPGEEDHKSILDHQPIDDGFPSSQSTPVYILNPKEDTHGLGYDPYKHAPEFREKKRTRVSGKRGSGNKQALSIKDSLFGLKSGRAAPG FGIGALEDYDAEDEDVYATAYDIEDTYIQEDEEPLRSNTENKPKLVWKEQGVLPGFKVASNSDYQLERFDPPVIPKDFLPHHKFPGPLEFDKKPATLSPP PPEVPPPEDDNSKVLIEGVATLVARCGKLFEDLSREKNQSNPLFSFLTGGNGHDYYSRKLWEEQQKRNGQKKIALDGKLSSSVDKMTVESRGKILGEMPL ERSSRDLSSSIASVNVNLPFNLSDTFTKPESSSEFPEVAKPFQDDPGKQERFEQFLKEKYQGGIRSTASAGASNMSEAARARERLDFEAAAEAIEKGKLN KENKLSQQLMAFPASGGMQFTLGGLQQGKDTPDEDLATKKIYPRREEFQWRPSSVLCKRFDLIDPSMGKPPPPPRMRSKMDSLIVTSDLKAMKMEEAFSA DRNQPLALQFSPQEVSKDVVDRETEPEVQVENVERPVDLYKAIFSDDSDDEMEASNFNAKEDPEKKIEVAHSTLNRLMAGDFLESLGRELGLEVPPNPPY STNIARSSHQKESAIANAGNDNIPSVEEKSFSIPIAHGVSQEERVANDEKTAKKGESRKDEQPRPSEDKSDKVYSGKIAQEDKKKAKLPRSVHRKRSSTS SEDERSRKRSRRHRDSTSDSYSDSSNDHRDRYRSKSKGRKKRSSREKKSSKKYSKQHKHGSRDSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Potri.012G058100 [exp]	0	1
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	4.69	0.8477
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	6.00	0.8407
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	6.00	0.8432
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	10.77	0.8368
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	11.18	0.8295
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	11.22	0.7996
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	15.90	0.8063
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	16.12	0.8060
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	16.24	0.8243
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	17.88	0.8118

Compare expression of checked genes

Potri.012G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.