Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23090 239 / 4e-82 CCAAT NF-YB13 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) AT5G08190 227 / 2e-77 CCAAT NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2) AT2G38880 74 / 3e-17 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT3G53340 72 / 2e-16 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 72 / 3e-16 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 71 / 2e-15 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT4G14540 69 / 2e-15 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 68 / 1e-14 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT1G21970 68 / 3e-14 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT1G09030 64 / 1e-13 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052800 [exp] 278 / 1e-97 AT5G23090 250 / 1e-86 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.016G005600 [exp] 79 / 1e-18 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.008G044800 [exp] 76 / 1e-17 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 74 / 4e-17 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.006G005000 [exp] 72 / 5e-16 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.016G085000 [exp] 71 / 9e-16 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.014G167800 [exp] 71 / 2e-15 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 70 / 3e-15 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 68 / 7e-15 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027242 [exp] 259 / 3e-90 AT5G23090 267 / 3e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10038952 [exp] 254 / 3e-88 AT5G23090 265 / 2e-92 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10009614 [exp] 254 / 1e-87 AT5G23090 269 / 2e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10000864 [exp] 224 / 7e-76 AT5G23090 231 / 9e-79 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10015058 [exp] 76 / 8e-18 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10003909 [exp] 76 / 4e-17 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001914 [exp] 75 / 9e-17 AT5G47670 218 / 2e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001751 [exp] 74 / 1e-16 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 73 / 2e-16 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023484 [exp] 72 / 4e-16 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.012G058200.2 pacid=42784085 polypeptide=Potri.012G058200.2.p locus=Potri.012G058200 ID=Potri.012G058200.2.v4.1 annot-version=v4.1 ATGGAACCGATGGATATAGTTGGTAAATCCAAGGAGGATGCTTCGCTTCCTAAAGCAACCATGACCAAAATTATTAAAGAGATGTTACCCCCAGATGTTC GTGTTGCCAGAGATACTCAAGATCTTTTAATTGAGTGCTGTGTAGAATTTATAAACCTTGTATCATCAGAGTCCAATGAAGTATGCAGCAGAGAGGACAA GCGAACAATTGCACCTGAGCATGTACTCAAGGCTTTACAGGTTCTTGGGTTTGGAGAGTACATTGAGGATGTTTATACAGCATATGAGCAACACAAGCTG GAGACTATGCATGACTCTTTAAAAGGTGGTGGTAAATGGAGCACTGGAGCGGCGATGACTGAGGAAGAAGCGGCGGCGGCGCAGCAAAGGATGTTTGATG AGGCGCGTGCAAGAATGAATGGTGTGGTCAGTGCCCCCAAGCAGCCAGAGGCTAACCAAAGTTTAGAGAGCTAG
AA sequence Show only first row Show all	>Potri.012G058200.2 pacid=42784085 polypeptide=Potri.012G058200.2.p locus=Potri.012G058200 ID=Potri.012G058200.2.v4.1 annot-version=v4.1 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEDVYTAYEQHKL ETMHDSLKGGGKWSTGAAMTEEEAAAAQQRMFDEARARMNGVVSAPKQPEANQSLES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.012G058200 [exp]	0	1	Pt-DR1.2
AT1G07310			Calcium-dependent lipid-bindin...		Potri.001G249300 [exp]	4.24	0.8751
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260600 [exp]	4.69	0.8819
AT4G35510			unknown protein		Potri.005G102000 [exp]	5.65	0.7993
AT4G35510			unknown protein		Potri.007G063000 [exp]	5.83	0.7949
AT2G41060			RNA-binding (RRM/RBD/RNP motif...		Potri.005G081600 [exp]	6.32	0.8317
AT3G02468		CPuORF9	conserved peptide upstream ope...		Potri.004G106750 [exp]	9.38	0.8368
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	11.48	0.7646
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Potri.001G370366 [exp]	13.41	0.8202
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	14.49	0.7619
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G022700 [exp]	15.09	0.7314	Pt-KNAT3.3

Compare expression of checked genes

Potri.012G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.