Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23100 262 / 5e-88 Protein of unknown function, DUF617 (.1) AT3G25640 244 / 3e-81 Protein of unknown function, DUF617 (.1) AT2G41660 188 / 8e-59 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT4G39610 176 / 3e-54 Protein of unknown function, DUF617 (.1) AT2G21990 173 / 2e-53 Protein of unknown function, DUF617 (.1) AT5G06990 170 / 3e-52 Protein of unknown function, DUF617 (.1) AT2G37880 160 / 2e-48 Protein of unknown function, DUF617 (.1) AT5G42680 147 / 1e-43 Protein of unknown function, DUF617 (.1.2) AT1G21050 138 / 6e-40 Protein of unknown function, DUF617 (.1) AT5G65340 126 / 3e-35 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053000 [exp] 402 / 1e-143 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 272 / 3e-92 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 246 / 6e-82 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 204 / 2e-65 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 197 / 9e-63 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 177 / 6e-55 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 174 / 8e-54 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 172 / 9e-53 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 157 / 1e-47 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000863 [exp] 265 / 2e-89 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 263 / 1e-88 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 252 / 3e-84 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 234 / 4e-77 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 233 / 2e-76 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 206 / 2e-65 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 206 / 2e-65 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 182 / 4e-56 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 181 / 2e-55 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10038951 [exp] 159 / 3e-49 AT5G23100 159 / 1e-49 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [poplar] [flax] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Potri.012G058300.1 pacid=42783577 polypeptide=Potri.012G058300.1.p locus=Potri.012G058300 ID=Potri.012G058300.1.v4.1 annot-version=v4.1 ATGGCTAGAACCTCTGAAGATTCCTCCTCCAAGAGACACTTCCACTGGACCAAAAAGGTTGGAAACGAAGATGTTGAAGCTCCAAGCATCAAGTCCTCCT CAAACCCCAACGAACAAGACAAAAATGAAAATGTTAAGAGCCATGTTGCAATGCCAACCCCGAAGAAAAGACTACCAGCAGTAGCAGTTGCTAGGCTCCG ATCGGTTCTTGCAGCCCTTGGTAAGAACCGATCAAGCCTTCCAATGGGGCTTGGATCCCGAGTGGTTGGTACCCTTTTTGGATATCGCCGGGGTCATGTC CATTTCGCATTTCAAAGGGATCCCAATTCACCTCCTACTTTCCTTATTGAGCTGGCTACACCAATAAGTGGATTGGTTAGAGAGATGGCATCCGGGTTAG TCAGAATTGCATTGGAATGTGACAAAGAGAAGGAAGATCAAAAGAAAGCTGTGAAATTGCTGGAAGAGCCAATGTGGAGGACTTATTGCAATGGAAAGAG ACGTGGTTTTGCCACGAGGAAGGAATGTGGGCATAAAGAGTGGAAGGTACTGAAAGCTGTAGAGCCAATCTCAATGGGTGCAGGTGTTTTGCCAGGGTGT GCAGCAGAGGGTGGAGCTGATGGTGAACTCATGTATATGAGAGCTAAGTTTGAAAGAATTGTGGGGTCTAGAGACTCTGAGGCTTTCTACATGATGAACC CTGATAGCAATGGAGCTCCTGAGCTCAGCATCTACCTGCTTAGAGTCTGA
AA sequence Show only first row Show all	>Potri.012G058300.1 pacid=42783577 polypeptide=Potri.012G058300.1.p locus=Potri.012G058300 ID=Potri.012G058300.1.v4.1 annot-version=v4.1 MARTSEDSSSKRHFHWTKKVGNEDVEAPSIKSSSNPNEQDKNENVKSHVAMPTPKKRLPAVAVARLRSVLAALGKNRSSLPMGLGSRVVGTLFGYRRGHV HFAFQRDPNSPPTFLIELATPISGLVREMASGLVRIALECDKEKEDQKKAVKLLEEPMWRTYCNGKRRGFATRKECGHKEWKVLKAVEPISMGAGVLPGC AAEGGADGELMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSIYLLRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23100			Protein of unknown function, D...		Potri.012G058300 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	1.41	0.9368
AT5G40960			Protein of unknown function (D...		Potri.017G064400 [exp]	2.82	0.9287
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	4.47	0.9105
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	5.91	0.9171
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	7.93	0.9273
AT4G16790			hydroxyproline-rich glycoprote...		Potri.001G155000 [exp]	8.66	0.8982
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	10.19	0.9030
AT4G25835			P-loop containing nucleoside t...		Potri.001G231200 [exp]	11.31	0.8916
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Potri.002G241300 [exp]	11.53	0.8814
AT3G49810			ARM repeat superfamily protein...		Potri.006G277700 [exp]	12.60	0.8495

Compare expression of checked genes

Potri.012G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.