Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18550 871 / 0 ATP binding microtubule motor family protein (.1) AT3G49650 268 / 7e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16060 211 / 3e-58 ATP binding microtubule motor family protein (.1) AT2G37420 214 / 9e-58 ATP binding microtubule motor family protein (.1) AT2G21380 211 / 7e-57 Kinesin motor family protein (.1) AT3G45850 210 / 1e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 207 / 2e-56 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 209 / 3e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 206 / 4e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16630 203 / 7e-55 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040700 [exp] 219 / 2e-59 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 210 / 1e-56 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 210 / 1e-56 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.018G079800 [exp] 206 / 1e-56 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.014G013300 [exp] 208 / 2e-56 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 206 / 3e-55 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G053800 [exp] 203 / 3e-55 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G122100 [exp] 206 / 5e-55 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 205 / 8e-55 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019245 [exp] 276 / 7e-82 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 275 / 7e-80 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024429 [exp] 214 / 2e-57 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10036146 [exp] 213 / 2e-57 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010441 [exp] 213 / 3e-57 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 213 / 3e-57 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 210 / 2e-56 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018120 [exp] 210 / 2e-56 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017969 [exp] 210 / 2e-56 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10009073 [exp] 210 / 3e-56 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.012G058400.3 pacid=42783828 polypeptide=Potri.012G058400.3.p locus=Potri.012G058400 ID=Potri.012G058400.3.v4.1 annot-version=v4.1 ATGCCAGTGTCAACAAGGTCTAAAGCCAACAGCCAAGAACAAAATGGCCCAAACCCAAATCTAAAAACAAGACCACCCAGCTACTCAAATCAAGAAGACA GTAACATGGATGTTCTGTTGAGAAATCCACATCATGGCTTGAAAGAAAAGATGAAAGCTTTAACTCTCTTGTATGAGCAGCAGAAGAAATCTTCTTTAAC TTTAAGGAACCCGTCTCCGAAACCTGAAGAGAAGCGATTCTCAACACATTCGAGTGTGGATCTTCTGAATGGTTGCAAGAGAGAAGAGAAAGATTCAAAA GAAACAAAAGATCCGAAACAAAACAATATAATGAGAGACAATGCATTGCCTACAATGCCTACATTGCCCAGTGCAAAGCCTGGTTCTACAGTGACAAGAA CATTTGTGTTACCAGAACCGCCTGTTGATGATGCCAAGGAGAATCTTGTGATGGGTCCGGATCGGGTTATCAGGTTTCTAACATGTCCAAGAAAGACTAA AGACTCAAGTACGGTGGCGAGGAAGCTTTCAATGGAGAGCTCAGTGTCACAGACAGAGCCGAGAGGGTTTATTGTGCCTAAGAAAGTGCAAGAAAATGAA AGATTGGAGACTGTTTCCGGTAAAAATGATGCAAGTGGAAGCCGGATTTTGGTGTTTGTGAGGCTTAGGCCAATGGCCAAGAAGGAGAGAGAGGCTGGTT TGAGGTGTTGTGTGAGGATTGTGAATAGGAGAGATGTTTATCTGACTGAGTTTGCTAACGAGAATGATTATCTTAGGCTAAAGAGGCTCCGTGGACGGCA TTTTGCATTTGACGCTGCATTTCCAGATTCAACATCTCAAAAGGAAGTTTATTCCACCACGACTGCAGATCTTCTAGAACAAGTATTGCAAGGAAGGAAT GGATCAGTGTTCTGTTATGGTGCCACAGGAGCTGGTAAAACATATACAATGCTGGGGACAGTAGAGAATCCAGGAGTGATGGTTTTGGCAATTAAGGATC TTTTTACCAAAATTAGGCAAAGGAGCTGTGATGGAAACCATGTGGTTCACCTCTCATATCTTGAAGTTTATAATGAAACTGTCAGAGATTTGCTCTCTCC AGGAAGGCCTCTGGTGCTTCGAGAAGATAAACAGGGAATAGTAGCAGCAGGTCTCACTCAGTACAGAGCTTATTCCACTGATGAAGTGATGGCATTGCTT CAGCAAGGAAACCAAAACCGAACCACTGAACCAACTCGTGCCAACGAAACCTCTTCACGATCCCATGCTATACTGCAGGTGGTTGTTGAATACCGAGTTA GAGATGCTTCCATGAATGTTGTCCAAAGAGTGGGAAAGCTGTCACTCATTGACCTTGCTGGCTCAGAGAGGGCCCTTGCAACTGATCAGAGAACACTTAG ATCACTTGAGGGTGCCAATATAAATAGGTCACTTCTTGCACTAAGCAGCTGCATCAATGCCCTTGTAGAGGGTAAGAAACATATCCCATACCGAAATTCA AAGCTCACTCAACTTCTCAAGGATTCGTTAGGAGGAGCTTGTAACACTGCAATGATTGCAAATATAAGTCCAAGTAATCTCTCGTTTGGGGAAACTCAAA ACACCTTGCATTGGGCTGATCGAGCTAAGGAGATCCGAACCAAGGCATGCGAGACCCTAGAAGAAATACAGTTACCAGAATGTGAAACTGACCAGGCCAA GCTGTTGCTTGAAGTGCAAAAAGAAAATCGCGAATTGCGAGTGCAATTAGTACACCAACAACAAAAGCTACTTTCACTCCAGGCACAATTGTTGGCTGCA AATACCTCTCCAACTCCTCCTTCAATTACCTTTACTCAGACTCCTCCGTCTACTGCCAGACCAATTGAAAAAAGGAAAGCTAGACCCTCTTTCTTAGGTG GGAACTGTTTCACACCAGAATCAAGAAAAAGGGACGCAGAGGAAGCAGTCAGAGAGCATCGGCAGACTGTCAAGGCATTAGAGGCAGAAATTGAGAAATT AAAGAAAGATCATGCTACACAGCTAAAGGAGAAGGATGATCGTATACATGAGCTTTCCCGAAAGAGTGAAAAGCCATCAGCAGGAGGAACAATGCAAGGA GCAAAGAGGGTAGTGACAAGAGCTAGTTTGCGGCCAAAGGAAAAAAACAATGGTGAATTGAAGAGTCCAAGCCACCGGTTCAAGTCCCCAATTCCAACAG CAAAGAAAAGAAGCTTTTGGGACATAACAACAGCTAACAGCCCATCAGTTGCTACACTAAATGGAAGAAAAACTAGAAGTCATGTCATTGCTGATAACAC TGCTGCAGCTCCATCCATGCTTCTTCAGCTTGCATATCCATGTTTCTGGTTTGTGTTCATGTTTGGACCACACATCGTCAATTATATCATTCAGCCAGGT TTTGCTCGTCAACGACCATGA
AA sequence Show only first row Show all	>Potri.012G058400.3 pacid=42783828 polypeptide=Potri.012G058400.3.p locus=Potri.012G058400 ID=Potri.012G058400.3.v4.1 annot-version=v4.1 MPVSTRSKANSQEQNGPNPNLKTRPPSYSNQEDSNMDVLLRNPHHGLKEKMKALTLLYEQQKKSSLTLRNPSPKPEEKRFSTHSSVDLLNGCKREEKDSK ETKDPKQNNIMRDNALPTMPTLPSAKPGSTVTRTFVLPEPPVDDAKENLVMGPDRVIRFLTCPRKTKDSSTVARKLSMESSVSQTEPRGFIVPKKVQENE RLETVSGKNDASGSRILVFVRLRPMAKKEREAGLRCCVRIVNRRDVYLTEFANENDYLRLKRLRGRHFAFDAAFPDSTSQKEVYSTTTADLLEQVLQGRN GSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALL QQGNQNRTTEPTRANETSSRSHAILQVVVEYRVRDASMNVVQRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNS KLTQLLKDSLGGACNTAMIANISPSNLSFGETQNTLHWADRAKEIRTKACETLEEIQLPECETDQAKLLLEVQKENRELRVQLVHQQQKLLSLQAQLLAA NTSPTPPSITFTQTPPSTARPIEKRKARPSFLGGNCFTPESRKRDAEEAVREHRQTVKALEAEIEKLKKDHATQLKEKDDRIHELSRKSEKPSAGGTMQG AKRVVTRASLRPKEKNNGELKSPSHRFKSPIPTAKKRSFWDITTANSPSVATLNGRKTRSHVIADNTAAAPSMLLQLAYPCFWFVFMFGPHIVNYIIQPG FARQRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	0	1
AT4G17000			unknown protein		Potri.009G081900 [exp]	1.41	0.9777
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	2.00	0.9716
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	2.00	0.9747
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	2.44	0.9722	TOP2.3
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	3.00	0.9635
AT5G37010			unknown protein		Potri.012G145200 [exp]	6.32	0.9645
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	6.48	0.9666
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	7.74	0.9588	TOP2.2
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	7.74	0.9702
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	10.19	0.9581

Compare expression of checked genes

Potri.012G058400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.