Plant FIBer expression Database

Potri.012G058550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1)
AT1G17210 51 / 1e-06 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G052400
[exp]
411 / 2e-136 AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1)
Potri.011G081200
[exp]
57 / 3e-08 AT1G17210 905 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038947
[exp]
186 / 3e-52 AT1G48950 487 / 2e-166 C3HC zinc finger-like (.1)
Lus10027238
[exp]
169 / 7e-46 AT1G48950 489 / 8e-167 C3HC zinc finger-like (.1)
Lus10038518
[exp]
54 / 3e-07 AT1G17210 855 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Lus10023288
[exp]
54 / 3e-07 AT1G17210 848 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.012G058550.1 pacid=42783121 polypeptide=Potri.012G058550.1.p locus=Potri.012G058550 ID=Potri.012G058550.1.v4.1 annot-version=v4.1
ATGCATCCTATATTTATAGGATTGGAGAAGTGCAGTATATGTAGGACTATACAACGAATAAAACGAAGCCATGAGTCTGCTTTATCACTAGTGGAACCAA
CTGGTAAAACAAGAGTGAGTGTTGGGCATGTTACTTCATCTGAACCTCCTCTGTGTAGGCCCTGGGACAGAGGAGATCTTGTGAGGAGGCTTGCCACTTT
TAAGTCAATGACCTGGTTCGCTAAGCCCAAGGCACAAAAACTCGTCAGTTTATGTGGCTGGGAACCACGTGCACTGCCTTACGTTGTTGACTGCAAGGAC
AGATCTACACAGCTTGTTAAGGATTCGGATGTCAGGGATTCATACCATATGGTCATTAATGGGCAGAATCCAAGTATCCGAGTCCATTCTGTTGCTTCTG
AGCAAAGTGTGGAGGCAAATGAAGAATCTGGCTCTTGTAGTGGGCGACATGCTGATCCTAATGCTGATGTTTTAGAGTGCAAGCTCTGTGGGGCAAGACA
AGATTCAGCTAACGAAAATCATGCGGGCAGCAGGGGAGTCATTGGAGACTCTGCCTCAAATGGTGCTTTGTCTTCCATGCATAGACCATCAGATTTAAGT
GTGACGATTGTTGGGGGTCCACTCCCTACAAAACAGAACTTCAAAGCAACAATTTCATTGCCTGTTATTGGCCAGAATTTAAGGGCCAGGCTTTCTTATG
ATTCTGATTTTAGGGATCGTATATGGCAGGGGCAGTGTAGTTATTCAAGAGGCAACCAATCTTCTTGTTTGAACTTTGAAAGTAGTGAAGGTGTTGCATT
TAGAAAAGAGAATAACTCCCAGATGTCTTCAGAAAGGACAGATATCACTAGAGAACCAACTTTTCCTGAAACTGCTGGGCATGATTCTGCTGTGCAATGT
TCGACACAGAGTCCAAGAAACACAGTGCATGTGGGGGCTTTTCGAGGTAATCAAGCTAGCACATCTCAAGTTGCCTGGTCAGATGCTATTGTCCCTGTTG
GAAATGGAAAGAGAAGTGAAAGTAACTCCTCGGAGATGATTATTTCATCTATCAATCATCATGGACAACAAATTCCAGGAGCAGATATCTCAGGCAGAAA
GGATCCTAAGCAACTGGCATTAGACAAAACATTGGGATTTAATCCAATCAGGCAACGTAGACATTTTTGCACCTGGATTGTATCAACAAGCAGCGGGCCA
CCTGGTTGGCAACAAACACTATCTGCTTTAGAGCGTCAGAAAGAGTTCTCTCTTCCTTCTACAAATTCTCCTCCATCTTCCTCCCTGATCAAGGTGGATG
ATCCCATTGCTTCAGTTAGAAAGCTTTTCATGTCTCCTATAAAAAGAACGAAGCCTACTAGTGGATCAAGTTGA
AA sequence
>Potri.012G058550.1 pacid=42783121 polypeptide=Potri.012G058550.1.p locus=Potri.012G058550 ID=Potri.012G058550.1.v4.1 annot-version=v4.1
MHPIFIGLEKCSICRTIQRIKRSHESALSLVEPTGKTRVSVGHVTSSEPPLCRPWDRGDLVRRLATFKSMTWFAKPKAQKLVSLCGWEPRALPYVVDCKD
RSTQLVKDSDVRDSYHMVINGQNPSIRVHSVASEQSVEANEESGSCSGRHADPNADVLECKLCGARQDSANENHAGSRGVIGDSASNGALSSMHRPSDLS
VTIVGGPLPTKQNFKATISLPVIGQNLRARLSYDSDFRDRIWQGQCSYSRGNQSSCLNFESSEGVAFRKENNSQMSSERTDITREPTFPETAGHDSAVQC
STQSPRNTVHVGAFRGNQASTSQVAWSDAIVPVGNGKRSESNSSEMIISSINHHGQQIPGADISGRKDPKQLALDKTLGFNPIRQRRHFCTWIVSTSSGP
PGWQQTLSALERQKEFSLPSTNSPPSSSLIKVDDPIASVRKLFMSPIKRTKPTSGSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48950 C3HC zinc finger-like (.1) Potri.012G058550
[exp]
0 1
AT3G18280 Bifunctional inhibitor/lipid-t... Potri.004G096000
[exp]
4.24 0.7969
AT1G14590 Nucleotide-diphospho-sugar tra... Potri.008G142200
[exp]
22.31 0.8102
AT1G60600 ABC4 ABERRANT CHLOROPLAST DEVELOPME... Potri.017G050900
[exp]
26.26 0.8005
AT3G57650 LPAT2 lysophosphatidyl acyltransfera... Potri.016G053000
[exp]
34.87 0.7637
AT1G15290 Tetratricopeptide repeat (TPR)... Potri.003G031000
[exp]
46.98 0.7332
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Potri.010G015200
[exp]
64.48 0.7659
AT4G35250 NAD(P)-binding Rossmann-fold s... Potri.009G143000
[exp]
88.45 0.7079
AT2G28080 UDP-Glycosyltransferase superf... Potri.004G214100
[exp]
119.92 0.7146
AT1G52190 Major facilitator superfamily ... Potri.018G041800
[exp]
128.31 0.6791
Potri.003G220000
[exp]
136.93 0.7393

Potri.012G058550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.