Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74070 311 / 2e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G55920 79 / 3e-17 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 80 / 5e-17 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 79 / 5e-17 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 76 / 4e-16 ROC7 rotamase CYP 7 (.1) AT4G38740 71 / 2e-14 ROC1 rotamase CYP 1 (.1) AT2G21130 67 / 3e-13 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 69 / 5e-13 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G16600 65 / 1e-12 ROC3 rotamase CYP 3 (.1.2) AT3G62030 66 / 3e-12 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046500 [exp] 81 / 9e-18 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 79 / 5e-17 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.002G185200 [exp] 79 / 1e-16 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.003G167700 [exp] 78 / 2e-16 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.010G189000 [exp] 77 / 2e-16 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G060200 [exp] 77 / 4e-16 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G130100 [exp] 72 / 4e-15 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G189900 [exp] 70 / 1e-13 AT5G35100 326 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.002G021500 [exp] 69 / 1e-13 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008990 [exp] 384 / 3e-134 AT1G74070 313 / 7e-107 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009619 [exp] 380 / 5e-133 AT1G74070 312 / 3e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018238 [exp] 85 / 2e-19 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 85 / 2e-19 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10011330 [exp] 79 / 1e-16 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 79 / 1e-16 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10014846 [exp] 77 / 6e-16 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10007579 [exp] 71 / 2e-14 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10030408 [exp] 72 / 3e-14 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038315 [exp] 71 / 7e-14 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.012G058700.4 pacid=42784281 polypeptide=Potri.012G058700.4.p locus=Potri.012G058700 ID=Potri.012G058700.4.v4.1 annot-version=v4.1 ATGTTGCGGAACCCAGAAGTATTTCAGTCCTCCATTAAACTCCATCTTCCAATACCACCAACACACCCTTCGCAGATCCAAAACATACCCAGTTCTCCAT CATCTACCGTAATCAAGCAATGCTGCAAACTATCGCGACGAAAGCTTGCCATTTTTGGCAACTCTTCATTGCTTCTTCTTCTAAGCTCTCAAACCCTAGA GCCATTCAATACGTCCAAAGCAAAAGCCGAAGAAGCTTTGCCAGATGCCAATGAAAACGGTCCACAGGAAGAAAATAATACAAGCACTAGACCAGAGTGC AGCAATAAAACTACAGCGCGAGCATTTCTTGATATATCAATTGATGGAGAACCTGTTGGCCGCATTGTTGTTGGACTATATGGAGAGGATGTCCCGGCTG GAGCGGCTAGGTTTAGCGATCTTGTAAGAGGAGCTGCTGGTGTTAGTTACAGAAGAAAAGAATTCATCAAGATCACGCCAAACTATGTGCAGCATGGTGG GGTAAGGTCATATGGTGTGGATGCTGAGCTTGCGCAGAGAACGGGAAGCAACTTGGCAGCGGAAAGTCTAGTAGATGAATGGCAGAGGGAGTATGAAACC TGTCCAGGTATCAAGAATCTGGCTGGAACTGTAAGCATTATTGTAAGGGATCCTTCTAAACCGCCTCCAAAGTTGAAGTTGGTCGCAAGGAAAGGAAAGC TTGAGATCGATCAAGAGGAAGTTGGGACTGACCCCAACGGTACCGAGTTTGTGATAGCCACTAAGGACTCACCAGAGCTGGATGCCTCGTCTCTGGTAGT TGGAAGAGTATTGGAAGGGATGGAGGTTGTAGAGAAGATTGGACAAGTGAAGACCGTGCAGGAGAATACCACATCTCCTTATTTCAGAGTTGCAAAGCTG ATAGGGGACAAGAGAGCTGTGGTTGCAGAAAGAGGCTTTAACCGACCGTATTCTAAAGTGGTGGTCACTAATTGCGGCTTGGAGTAA
AA sequence Show only first row Show all	>Potri.012G058700.4 pacid=42784281 polypeptide=Potri.012G058700.4.p locus=Potri.012G058700 ID=Potri.012G058700.4.v4.1 annot-version=v4.1 MLRNPEVFQSSIKLHLPIPPTHPSQIQNIPSSPSSTVIKQCCKLSRRKLAIFGNSSLLLLLSSQTLEPFNTSKAKAEEALPDANENGPQEENNTSTRPEC SNKTTARAFLDISIDGEPVGRIVVGLYGEDVPAGAARFSDLVRGAAGVSYRRKEFIKITPNYVQHGGVRSYGVDAELAQRTGSNLAAESLVDEWQREYET CPGIKNLAGTVSIIVRDPSKPPPKLKLVARKGKLEIDQEEVGTDPNGTEFVIATKDSPELDASSLVVGRVLEGMEVVEKIGQVKTVQENTTSPYFRVAKL IGDKRAVVAERGFNRPYSKVVVTNCGLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74070			Cyclophilin-like peptidyl-prol...		Potri.012G058700 [exp]	0	1
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.002G169100 [exp]	1.00	0.9691
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.004G048900 [exp]	2.00	0.9617	Pt-APE2.2
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	2.44	0.9673
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	7.00	0.9488
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	7.54	0.9644	Pt-PSBQ2.2
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.003G015200 [exp]	8.66	0.9407	Pt-PETF.4
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	9.21	0.9586
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.007G072500 [exp]	14.49	0.9331
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	15.87	0.9466
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.009G067300 [exp]	18.11	0.9483

Compare expression of checked genes

Potri.012G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.