Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70330 530 / 0 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 330 / 2e-110 Nucleoside transporter family protein (.1.2) AT4G05120 149 / 2e-40 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT3G09990 145 / 6e-39 Nucleoside transporter family protein (.1) AT4G05110 144 / 2e-38 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05130 142 / 8e-38 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 130 / 1e-33 ATENT7 equilibrative nucleoside transporter 7 (.1) AT4G05140 128 / 1e-32 Nucleoside transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130000 [exp] 325 / 4e-108 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 322 / 4e-107 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 148 / 1e-42 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2) Potri.004G032400 [exp] 147 / 9e-40 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 146 / 2e-39 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 127 / 2e-32 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 118 / 3e-29 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 102 / 2e-23 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013002 [exp] 569 / 0 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10029162 [exp] 562 / 0 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10030104 [exp] 336 / 2e-112 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10018413 [exp] 159 / 2e-43 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 157 / 3e-43 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 156 / 4e-43 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 155 / 2e-42 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 134 / 2e-34 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 113 / 1e-27 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002167 [exp] 52 / 8e-09 AT1G02630 95 / 3e-25 Nucleoside transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF01733 [poplar] [flax] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Potri.012G058900.2 pacid=42782519 polypeptide=Potri.012G058900.2.p locus=Potri.012G058900 ID=Potri.012G058900.2.v4.1 annot-version=v4.1 ATGGGACTCACCTCCACAGAACCAGACACTGAATCCTCTCTCCTCCTCCCCACCACCGCCGCCACCACCACCACCACCACCACCACCACAAACAGCACCA TCTCCCAACAAAAAATCCCAAAAGACACATTCCACTTAGCCTACATAATCTACTTCACTCTAGGCCTCGGCTTTCTCCTTCCATGGAACGCATTCATCAC AGCCGTTGATTACTTCTCTTACATCTACCCAGATGTCTCAGTTGATCGCATATTCTCCGTTGCTTACATGGTCATGGGCCTGGCGTGTCTTGTAGTAATC ATCCTTTTTTATGCACATAAATCAGATGCTTATTTGAGAATTAATCTGGGTTTGGGTCTTTTTATTGTGGCTCTTTTGGTTGTTCCTGTTATGGATGCTG TTTATATTAAGGGTCGGGTCGGGTTGTATGATGGTTTTTATGTTACTGTTGGGGCTTTGGCACTTTCGGGTATGGCGGATGCTTTAGTCCAAGGTGGACT TATTGGTGCTGCTGGTGAATTGCCTGAGAGGTATATGCAAGCCGTTGTTGCTGGCACTGCTGCCTCTGGGGTCCTTGTTTCACTTCTAAGAATTTTAACC AAAGCTGTATATACACAAGATTCCCATGGTTTGCGAAAAAGTGCGAACCTCTACTTTGCTGTTGGAATTGTAGTTATGGCCATCTGCCTTGTCTTTTACA ACATGGCACATAGACTGCCAATTATGAAGTACTATGCTGACTTGAAAATTCAGGCAGTGAATGAGGACAAAGAGGAGAAAGGTTCCTTGACTGGAGCTCG TTGGCGGTCAACCTTGTGGGAGATTGTTTGCAGTGTCCAATGGTATGGGATTGGAATTGTCATCATCTATGTTGTAACTTTATCGATATTTCCAGGATAT ATAACGGAGGATGTGCACTCTGAGATTCTCAAGGACTGGTACTCAATCATCCTCATTACTGGCTACAATGTGTTTGACTTGGTTGGCAAGTCTTTGACTG CTGTCTATCTCTTAAAGAATGCAAAGATTGCCATTGGTGGTTGTTTTGTAAGATTGCTGTTTTATCCTCTCTTCTTTGGTTGCTTGCACGGTCCTAAATT CTTTCGAACAGAGATCCCAGTAACATTACTCACATGTCTTTTAGGGCTAACAAATGGCTATTTGACTAGTGTTCTGATGATTCATGCTCCCAAGGTTGTC CCGTTACGGCAGGCAGAGACTGCCGGAATTGTGATAGTGCTGTACCTTGTGGCTGGCCTTGCTGCTGGATCAATTGTAGCTTGGTTTTGGGTCATCTGA
AA sequence Show only first row Show all	>Potri.012G058900.2 pacid=42782519 polypeptide=Potri.012G058900.2.p locus=Potri.012G058900 ID=Potri.012G058900.2.v4.1 annot-version=v4.1 MGLTSTEPDTESSLLLPTTAATTTTTTTTTNSTISQQKIPKDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYIYPDVSVDRIFSVAYMVMGLACLVVI ILFYAHKSDAYLRINLGLGLFIVALLVVPVMDAVYIKGRVGLYDGFYVTVGALALSGMADALVQGGLIGAAGELPERYMQAVVAGTAASGVLVSLLRILT KAVYTQDSHGLRKSANLYFAVGIVVMAICLVFYNMAHRLPIMKYYADLKIQAVNEDKEEKGSLTGARWRSTLWEIVCSVQWYGIGIVIIYVVTLSIFPGY ITEDVHSEILKDWYSIILITGYNVFDLVGKSLTAVYLLKNAKIAIGGCFVRLLFYPLFFGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIHAPKVV PLRQAETAGIVIVLYLVAGLAAGSIVAWFWVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Potri.012G058900 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.015G064000 [exp]	2.00	0.7869
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Potri.007G101500 [exp]	6.40	0.8145	Pt-ATHDH.3
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.019G039200 [exp]	7.93	0.7805	Pt-UBC1.2,HUPB903
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.009G118500 [exp]	11.22	0.7533
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.005G085100 [exp]	14.69	0.7691
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	15.55	0.7295
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G232200 [exp]	17.14	0.7066
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.018G145900 [exp]	20.14	0.7679	Pt-PBA1.1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.014G086600 [exp]	21.90	0.7439	Pt-UBC4.2
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.015G103400 [exp]	22.27	0.7670

Compare expression of checked genes

Potri.012G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.