Plant FIBer expression Database

Potri.012G059000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42780 207 / 3e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010947
[exp]
288 / 4e-99 AT2G42780 204 / 3e-65 unknown protein
Lus10031380
[exp]
258 / 1e-87 AT2G42780 191 / 5e-61 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF06881 Elongin_A RNA polymerase II transcription factor SIII (Elongin) subunit A
Representative CDS sequence
>Potri.012G059000.4 pacid=42782967 polypeptide=Potri.012G059000.4.p locus=Potri.012G059000 ID=Potri.012G059000.4.v4.1 annot-version=v4.1
ATGCTAAGGACTAAGAGGAAAGTGCCTTCATTGGTGGATCTTTGTGTTAGTTTAGCAGTAGAGAATGTCAAGTACCTAGGAGATGTTGGAGAAACTGATT
TACATCTTCTTGACCGCATCTTACCTCATTGTACATTGGATCAGCTGATGCACATCGAGAAGAGTACTGTTGGACGCGATCTTAGTTCAGTAACTGATAA
GCTGTGGAAAACATTTTATGAGAAACAGTTCGGTGAGAGGAGTACTGATCTTGTGATTCAGAGGATGAGGCAGAAGAAAGTTTCATTTCGATGGTTACAA
TTATACGAGGCAAAGCTGAAGGACATTGCGGAGGCAGAGAACAAATTAGCTGCTCGAATCAGGCAACTATACAAAAAAGAAGATGACAGAAAACAAAGTC
GACAAGTTCGTCTTTGCTCGAAGGTTCCACCTTCAAGCAATAAAAGAAGCTTTTGCGGAGGAAGTGGACCTGGCTACAATCTTTCCAACGGGAAGAGCAA
TTTGATGAAGAAGGCAAAAATGGATTTTCTGAAGAGTCGCGAGGTGCAAAATATTGCCGCCATGAAGAAAAATGCTCTGCAAAGGAATAGCAGTTCGTCT
TCCATGATGAAGCCACCGGGTAGCTTTCCTGGGAAAAGTTCTGCATCTTCGAATCCAATGAAGCCCCGGGAGAGGAGATTCTAG
AA sequence
>Potri.012G059000.4 pacid=42782967 polypeptide=Potri.012G059000.4.p locus=Potri.012G059000 ID=Potri.012G059000.4.v4.1 annot-version=v4.1
MLRTKRKVPSLVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQ
LYEAKLKDIAEAENKLAARIRQLYKKEDDRKQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLKSREVQNIAAMKKNALQRNSSSS
SMMKPPGSFPGKSSASSNPMKPRERRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42780 unknown protein Potri.012G059000
[exp]
0 1
AT1G05620 NSH2, URH2 nucleoside hydrolase 2, uridin... Potri.007G144600
[exp]
5.65 0.8134
AT4G01370 ATMPK4 MAP kinase 4 (.1) Potri.003G131800
[exp]
5.65 0.7217 MMK3.1
AT2G31490 unknown protein Potri.006G077400
[exp]
6.00 0.7832
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.019G111200
[exp]
11.83 0.7619 Pt-ATHM1.3
AT1G07950 MED22B Surfeit locus protein 5 subuni... Potri.008G080700
[exp]
14.49 0.7595
AT1G55805 BolA-like family protein (.1) Potri.012G036800
[exp]
14.83 0.7334
AT4G24820 26S proteasome, regulatory sub... Potri.012G093500
[exp]
19.89 0.7311
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.009G136900
[exp]
20.92 0.7585
AT2G02390 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, ... Potri.014G069600
[exp]
20.97 0.6664
AT3G04830 Protein prenylyltransferase su... Potri.005G051300
[exp]
22.27 0.7496

Potri.012G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.