Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48960 175 / 3e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G03720 45 / 6e-06 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140200 [exp] 54 / 1e-08 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 47 / 2e-06 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 46 / 4e-06 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038945 [exp] 204 / 1e-66 AT1G48960 236 / 4e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10027236 [exp] 187 / 4e-60 AT1G48960 231 / 5e-77 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 51 / 9e-08 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.012G059100.2 pacid=42783595 polypeptide=Potri.012G059100.2.p locus=Potri.012G059100 ID=Potri.012G059100.2.v4.1 annot-version=v4.1 ATGGATGTGAGGAAAATTGTGGTGGTAGTAGAAGACGTAGACGCAGCAAGAACAGCCCTTAAATGGGCTCTCCACAACTTGCTTCGTTTTGGCGATTTCA TAACTCTCCTTCATGTTTTCTCTCCTGCTATGAACTCATCAAGAAGCAAGAACAAGATAAGGCTACTTCGCTTGAAAGGTTACCAATTGGCTCTGTCATT CAAAGATATATGCAACAACTTCTTTAATACAAACGTTGAGATTATTGTAACTGAAGGCGATCAAGAGGGTGGAAAGATTGCTGCTATGGTGAGAGAAATT GGTGCCTCTGCACTTGTTGTTGGACTCCATGATCGGAGTTTTCTATACAAGTTGGCAATGGCCCACAACAGTATTGCAAACAGCTTCAGCTGCAGGGTAC TGGCCATCAAACCACCACCATTGCCCCTGTGGAGGTCTACCTGTGCCAGGGCCAGCGCAGCACGAGCACCAGACATTTCAATCAGCAGCATGGACTTCTC GCAGATCGAGATTGGTAGACCATTAGAGGTTCCTGATATTGCTCCACCAAAAGTTCCTTACAAAATCTGCCCAGATCCATCTGCAATAATATGGAGATCG AGGAAGTCAAAGAGAAAGGGTAGCTCTTGCATTAGCACTTAG
AA sequence Show only first row Show all	>Potri.012G059100.2 pacid=42783595 polypeptide=Potri.012G059100.2.p locus=Potri.012G059100 ID=Potri.012G059100.2.v4.1 annot-version=v4.1 MDVRKIVVVVEDVDAARTALKWALHNLLRFGDFITLLHVFSPAMNSSRSKNKIRLLRLKGYQLALSFKDICNNFFNTNVEIIVTEGDQEGGKIAAMVREI GASALVVGLHDRSFLYKLAMAHNSIANSFSCRVLAIKPPPLPLWRSTCARASAARAPDISISSMDFSQIEIGRPLEVPDIAPPKVPYKICPDPSAIIWRS RKSKRKGSSCIST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	0	1
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Potri.002G254200 [exp]	1.73	0.8892
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	3.87	0.8677
AT5G67390			unknown protein		Potri.005G145800 [exp]	4.47	0.8709
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	10.19	0.8299
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	10.72	0.8599
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	12.00	0.8131
AT5G58580		ATL63	TOXICOS EN LEVADURA 63 (.1)		Potri.001G279200 [exp]	16.43	0.7375
AT5G24320			Transducin/WD40 repeat-like su...		Potri.005G057600 [exp]	19.18	0.7806
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.002G188100 [exp]	21.44	0.8025
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	22.75	0.8158	Pt-YUC.2

Compare expression of checked genes

Potri.012G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.