Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18560 954 / 0 BED zinc finger ;hAT family dimerisation domain (.1) AT3G42170 132 / 8e-32 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G126500 [exp] 147 / 1e-36 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G104000 [exp] 145 / 2e-36 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 144 / 9e-36 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 142 / 4e-35 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 141 / 1e-34 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 141 / 1e-34 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 120 / 4e-28 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.016G026066 [exp] 88 / 5e-18 AT3G42170 0 / 1 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 76 / 6e-14 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005558 [exp] 127 / 3e-30 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10032337 [exp] 121 / 4e-28 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.012G059200.4 pacid=42783056 polypeptide=Potri.012G059200.4.p locus=Potri.012G059200 ID=Potri.012G059200.4.v4.1 annot-version=v4.1 ATGGATTTTGGGACAGGAAGTGTGAGTGGGAGAGCTGCTGCAAACCAAATGGAGTGGACTGTAAATAATGCGTTCAAAACTTACAAAGCTGTTGCTTGTG GAGTAGATATGGATCATCCCAAATCAATGATGGATGTGGCACTCATCCAAAATGTCGATCCAGTAGATATTGGACTGGGATCTTCAGAAAAGGGAACTAT TGTGGTTCCAACAAAAAGAAAGAAGACAATGACTTCAGTCTATCTTAAATTTTTTGAGACTGCTCCTGACGGAAAGAGTCGGCGGTGCAAGTTTTGTGGA CAAAGTTATTCTATTGCAACTGCCACGGGCAATTTGGGAAGGCACCTGAGTAATCGCCATCCAGGATATGATAAGTCCGGAGATTCAGTCACTAGTTCAG CACCACAGCCCATCACTGTGGTCAAGAAAGCTCAACAACAGGGGAAACAACAGATGGATTATGATCATATAAATTGGTTGCTCGTTAAGTGGCTCATCTT AGCTTCTCTTCCTCCTTCAACCTTGGAAGAAAAGTGGTTGGCAAACTCATTTAAATTTCTAAACCCATCAATACAACTCTGGCCAGGTGAGCGGTACAAA GTAAAAATCCGTGAAGTTTTCAGGAGCATGCAGGAAGATGTGATGGCTACTTTGGAAAAGGTTTCGTCCAAGGTTTCAATTATTCTGGATTTCTGGAGCT CCTATGAGCAAATATTCTATATGAGCGTCACATGTCAGTGGATAGATGAAAACTGGTCCTTCCAACAAGTCCTTCTTGACATATGTCAAATACCTTATCC TTGTGGTGGTTCTGAGATTTATCATTCCCTGGAAAAGGTTCTCAAGATGTACAACATAGAGAGTAGAGTCCTCTCATGCACTCACGATAACAGTCAGAAT GCTATTCATGCGTGCCATACTCTGAAGGAGGAGTTAGATGGTCAGAAACTGGGGATGTTCTGCTATATTCCTTGTGCTGCTCGCACTTTGAACTTGATTA TAGAAGATGGATTAAGAACCACAAAACCAGTAATATCTAAGGTCAGGGAGTTTGTGCTAGAGCTAAATTCATCAGCCAAGATGTCAGAGGATTTTATTCA ACTAACAGCAGCTTATCAGGAGGGCAGTTGGAAATTTCCACTTGAAACTTCAGCACGCTGGAGTGGTAATTACCAGATGCTTGATATTGTGTGCAAGGCT GGAAAGTCTATGGATGGCGTTATGAGAAAGTACGAGGAGACAATTGTTGGGAGGACGGTGCTGAGCCCTGCAGAAAAGAATGCAGTTAGTATCGTGCATA AATATTTGGAACCCTTCTACAAAACCACAAACAACATTTGCACAAATAAGTTACTCACCATCGGGCTGGTTCTCTTCTTCATGGATCACATCTCTGAGAT GATTACCCTATGCAAAGATTCCCGTCTCAGCTCAGATTGGCTAAAAAATGCTGCTGAAGACATGGCAACAAAGTCTAGGAGTTACACCACACAGGTTGGC AACATATTCATCTTCATGACAGCAATTCTGGATCCCCGAATCAAATGTGAGCTCATCCCTGAGAGCCTCAGCTCAGGAAACTATCTGGAGGAAGCCAGAA CTCTATTCATAAGAAATTACTCTAGCAGCCATTTTTCATCCATGACAAGTGGGTATGGTGCTCAAGAGATTGAAGACGGGGGGGGTGTTTCCTTTGCAGA GGAAATTGCTAGGAAGAAGCGAAGAGTGAGCTTGAGCAATGCAACCGACGAGCTTACTCAGTACCTGTCAGAGCCTCCCGCTCCAATACCAACAGATGTC CTGGAGTGGTGGAAGGTCAACAGCACGCGCTATCCACGTCTTTCAGTGATGGCCCGGGATTTCTTGGCTGTGCAGCCGACCTCAGTGGCGCCTGAAGATC TGTTTTGCAGTAAAGGTGATGAAATTGACAAGCAACGATTTTGTATGCCACATGATAGCACACAGGCGATTCTTTGTATCAGGTCATGGATGCAAGGAGG GATCAAGTTGAAGTGCAAGTCAGATGAGATAGACTACGAGAGATTGATGGAAATGGCAGGTGCTACAACAGCAGAAAACACTGTTGGCCTGGACAAGAAA CAAAGATGA
AA sequence Show only first row Show all	>Potri.012G059200.4 pacid=42783056 polypeptide=Potri.012G059200.4.p locus=Potri.012G059200 ID=Potri.012G059200.4.v4.1 annot-version=v4.1 MDFGTGSVSGRAAANQMEWTVNNAFKTYKAVACGVDMDHPKSMMDVALIQNVDPVDIGLGSSEKGTIVVPTKRKKTMTSVYLKFFETAPDGKSRRCKFCG QSYSIATATGNLGRHLSNRHPGYDKSGDSVTSSAPQPITVVKKAQQQGKQQMDYDHINWLLVKWLILASLPPSTLEEKWLANSFKFLNPSIQLWPGERYK VKIREVFRSMQEDVMATLEKVSSKVSIILDFWSSYEQIFYMSVTCQWIDENWSFQQVLLDICQIPYPCGGSEIYHSLEKVLKMYNIESRVLSCTHDNSQN AIHACHTLKEELDGQKLGMFCYIPCAARTLNLIIEDGLRTTKPVISKVREFVLELNSSAKMSEDFIQLTAAYQEGSWKFPLETSARWSGNYQMLDIVCKA GKSMDGVMRKYEETIVGRTVLSPAEKNAVSIVHKYLEPFYKTTNNICTNKLLTIGLVLFFMDHISEMITLCKDSRLSSDWLKNAAEDMATKSRSYTTQVG NIFIFMTAILDPRIKCELIPESLSSGNYLEEARTLFIRNYSSSHFSSMTSGYGAQEIEDGGGVSFAEEIARKKRRVSLSNATDELTQYLSEPPAPIPTDV LEWWKVNSTRYPRLSVMARDFLAVQPTSVAPEDLFCSKGDEIDKQRFCMPHDSTQAILCIRSWMQGGIKLKCKSDEIDYERLMEMAGATTAENTVGLDKK QR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	0	1
AT1G64050			unknown protein		Potri.001G098500 [exp]	1.73	0.8611
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	3.46	0.8633
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	3.60	0.8769	GTE910
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Potri.015G100200 [exp]	7.41	0.8303
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	7.41	0.8517	Pt-FHY3.1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	8.71	0.8568
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	8.94	0.8304
AT1G26580			unknown protein		Potri.010G159700 [exp]	9.53	0.8228
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	10.39	0.8316
AT1G34320			Protein of unknown function (D...		Potri.019G085900 [exp]	10.95	0.8138

Compare expression of checked genes

Potri.012G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.