Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38640 691 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 615 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G44070 540 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G72340 76 / 2e-14 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 73 / 3e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 73 / 3e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103700 [exp] 706 / 0 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.017G111800 [exp] 691 / 0 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.010G068600 [exp] 84 / 7e-17 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G072100 [exp] 79 / 3e-15 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.001G163300 [exp] 78 / 3e-15 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038944 [exp] 733 / 0 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10027234 [exp] 729 / 0 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10003938 [exp] 78 / 6e-15 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10037451 [exp] 72 / 1e-13 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01008 [poplar] [flax] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Potri.012G059300.5 pacid=42782860 polypeptide=Potri.012G059300.5.p locus=Potri.012G059300 ID=Potri.012G059300.5.v4.1 annot-version=v4.1 ATGGACGCGCGTAGAGCCACCACCACTGTCCCCAGGGTACGGCAAGTTGGATTCTTCACGCCCAATGCGCCGCCTGCTCAGCCGAGTCGGACTCAGTCCT TCCCTCGCGATTCGAGCTCACCACCTCTCTCCAACTCTCCTGCAAGCAACTCCTTATCACCCGTAATGATTCCTCCGCCACGTCACCTTTCCGATAACCT CGTTCACCGCGCAACCTCACCTCTCCCCGTCCCTGAACCCCCCGCCTTCCGCCGCCCTATCCGCAGCCACCACGTGGCGGTAGTCGGGAGCTACAATCCA TCGGAGTCGCTCCTCGGCTCGTCGCCTCCGCTGGCTTCCCCGTCTAGTCGAGTGATTGGAGATGGAGACTTCTCGGAGGAGTCGTCTGCTGGTTGGTTTC GGAGGAGTAATTCGGCGAAATTCGCTTCGAGTTTTAGCGGCGGGTTTGACTTGACGTCTGTGAAGTCATCAGAGACTATGGGATTTCATCAAGTTAAAAA ACCTGTTGTCGCTCAACTCAAAGAGGAGAAAAGTGGAGCTTCTGCTGTTGTGGAACCTCAGATAAATAAAGGGCTTTCTTCTTCTCCGAGTACAAAACCA TCGAAAGAGAAAACAACAAAAGCTGAACGGCGTGCCTTGCAGGAAGCTCAACGTGCTGCAAAAGCTGCTGCTAAAGCTATGACTGTGTCTGAGGGAGTAT CTACTAGTAAACCTGTGAAGCAGCAGCCAGCACAGAAGAAAGATGCTCCCCCACCTGCATCTTCAATTGCAGCTTCTGATAGGAAAGGAGGTGAACGTTC TATGGAAAAAGAGAGGAGGAAAGATATCCCTGCACCACGAATGCAATTTGATGACAGAAGTCGTGTGCAAAAGGCTAAAAAGCGTGCAGTGGTCAATCAA AGTGAAGCTAGGAATAGGGTTGAGTTGTTTCGACACTTACCGCAGTATGAACATGGAACTCAGCTTCCTGACCTTGAGTCGAAATTTTTCCAACTTGATC CTATGCATCCAGCTGTTTACAAGGTTGGCCTACAGTATTTGGCTGGGGATATCTCTGGAGGTAATGCTCGATGTATTGCAATGCTTCAGGCATTTCAGGA AGTCATTAAAGACTATTCCACACCACCTGAGAAATCTCTTACTAGAGACTTAACTGCAAAAATCAGTAGTTTTGTTTCCTTTTTTATAGAATGCCGACCA TTTTCTATGAGCATGGGAAACGCAATTAGGTTTCTCAAGAGTCGGATTGCGAAGTTGCCTTTAACTGTTTCTGAATCAGAAGCAAAAGCCTCCCTTTGTG CAGATATTGATCGTTTCATAAATGAGAAGATAGTACTTGCTGACAATGTGATAATTAGGCATGCTGTTACCAAGATCACGGATGGGGATGTTCTTCTCAC ATATGGATCATCATGTGTCGTTGAGATGATTCTGTTATATGCCCATGAGCTTGGGAAACGGTTCCATGTTGTTATAGTGGACTCTCATCCGAAACTTGAG GGCCAAGCCCTACTCCGTAGACTGGTCGGAAAGGGACTGAGGTGTACATATACTCACATAAATGCTGTTTCTTATATCATGCATGAAGTTACTCGAGTTT TCTTGGGCTCTTCCTCAGTATTATCTAATGGAACTGTGTATTCGCGGGTTGGGACTGCATGTGTTGCCATGGTTGCTCATGCATTCCATGTTCCAGTCTT AATATGCTGTGAAGCCTATAAATTTCATGAAAGAGTACTGCTTGATTCAATCTGTTCAAATGAATTAGGTGATCCAAATGCTATTTCAAAGGTTCCTGGA AGAATGGATATTAATTTCCTGGATGATCTGACCAATAAGGATGATCTGCAGCTTCTAAATTTGATGTATGATGCCACTCCTTCGGAATATGTCTCAATGA TCATCACTGATTATGGGATGATCCCACCCACAAGTGTGCCTGTCATTGTGCGCGAGTATGGGAGGGAGCACCTGTGGATACAGTAA
AA sequence Show only first row Show all	>Potri.012G059300.5 pacid=42782860 polypeptide=Potri.012G059300.5.p locus=Potri.012G059300 ID=Potri.012G059300.5.v4.1 annot-version=v4.1 MDARRATTTVPRVRQVGFFTPNAPPAQPSRTQSFPRDSSSPPLSNSPASNSLSPVMIPPPRHLSDNLVHRATSPLPVPEPPAFRRPIRSHHVAVVGSYNP SESLLGSSPPLASPSSRVIGDGDFSEESSAGWFRRSNSAKFASSFSGGFDLTSVKSSETMGFHQVKKPVVAQLKEEKSGASAVVEPQINKGLSSSPSTKP SKEKTTKAERRALQEAQRAAKAAAKAMTVSEGVSTSKPVKQQPAQKKDAPPPASSIAASDRKGGERSMEKERRKDIPAPRMQFDDRSRVQKAKKRAVVNQ SEARNRVELFRHLPQYEHGTQLPDLESKFFQLDPMHPAVYKVGLQYLAGDISGGNARCIAMLQAFQEVIKDYSTPPEKSLTRDLTAKISSFVSFFIECRP FSMSMGNAIRFLKSRIAKLPLTVSESEAKASLCADIDRFINEKIVLADNVIIRHAVTKITDGDVLLTYGSSCVVEMILLYAHELGKRFHVVIVDSHPKLE GQALLRRLVGKGLRCTYTHINAVSYIMHEVTRVFLGSSSVLSNGTVYSRVGTACVAMVAHAFHVPVLICCEAYKFHERVLLDSICSNELGDPNAISKVPG RMDINFLDDLTNKDDLQLLNLMYDATPSEYVSMIITDYGMIPPTSVPVIVREYGREHLWIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.012G059300 [exp]	0	1
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032500 [exp]	2.00	0.8826
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Potri.009G168100 [exp]	2.44	0.8904
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	4.35	0.8943
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.001G140300 [exp]	6.92	0.8746
AT5G60190			Cysteine proteinases superfami...		Potri.013G002700 [exp]	7.74	0.8238
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	9.94	0.8843
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	10.90	0.8584
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	12.84	0.8653
AT1G03280			Transcription factor TFIIE, al...		Potri.010G102000 [exp]	12.96	0.8625
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	14.38	0.8684

Compare expression of checked genes

Potri.012G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.