Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18570 113 / 3e-32 Oleosin family protein (.1) AT1G48990 98 / 2e-26 Oleosin family protein (.1) AT4G25140 60 / 1e-11 OLE1, OLEO1 oleosin 1 (.1) AT2G25890 53 / 2e-09 Oleosin family protein (.1) AT5G40420 50 / 5e-08 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G27660 50 / 9e-08 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT5G51210 43 / 1e-05 OLEO3 oleosin3 (.1) AT3G01570 40 / 0.0002 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234900 [exp] 66 / 3e-14 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.001G080000 [exp] 62 / 1e-12 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.003G150600 [exp] 54 / 1e-09 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.015G081901 [exp] 53 / 3e-09 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.T125308 [exp] 53 / 3e-09 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.018G057800 [exp] 52 / 6e-09 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.012G083400 [exp] 47 / 6e-07 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.001G345800 [exp] 44 / 7e-06 AT3G01570 140 / 6e-43 Oleosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032461 [exp] 128 / 5e-38 AT3G18570 142 / 1e-43 Oleosin family protein (.1) Lus10042957 [exp] 127 / 1e-37 AT3G18570 139 / 2e-42 Oleosin family protein (.1) Lus10017992 [exp] 117 / 1e-33 AT3G18570 136 / 4e-41 Oleosin family protein (.1) Lus10041987 [exp] 112 / 2e-31 AT3G18570 129 / 2e-38 Oleosin family protein (.1) Lus10031387 [exp] 62 / 1e-12 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10027161 [exp] 62 / 2e-12 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10039683 [exp] 59 / 2e-11 AT4G25140 159 / 2e-50 oleosin 1 (.1) Lus10010943 [exp] 60 / 7e-11 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10022141 [exp] 58 / 2e-10 AT4G25140 106 / 3e-28 oleosin 1 (.1) Lus10017460 [exp] 57 / 2e-10 AT4G25140 136 / 9e-42 oleosin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [poplar] [flax] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Potri.012G059400.1 pacid=42782964 polypeptide=Potri.012G059400.1.p locus=Potri.012G059400 ID=Potri.012G059400.1.v4.1 annot-version=v4.1 ATGGCTGACCGTGCCCCTACCCAGAGAGCTACAAGACCCACCACCACTCCCACCACCCACAATGGCTCTACATTTCTACGTAAACTCCAAGTCCATATCG GATCAAACTCAAGCCAACTTGTTGGTTTGTTGACTCTTATCATCTCCGGCTCCATTCTCCTTCTCCTTACAGTGATCACTGTCACAGGATCAGTACTCGG GTTGACCCTTTTAACTCCTTTGATCATCATTTCAAGCCCCATATGGATCCCTATAGGCATAGTCCTCTTCTTTGTTGTTGCTGGGTTCTTATCTTTTTGC GGGTTCGGATTGGCCGTCGTGGCTGGATTGTCATGGGTGTATAAGTATTTTAGAGGGTTGAATCCACCTGGGTCGGACCAGGTCGATTATGCTCGTAACA GAATCTACGATACAGCGAGCCATGTGAAGGACTACGCCAGGGAGTATGGTGGGTACTTGCAGAGCAAGGTGAAGGATGCGGCTCCTGGTGCCTGA
AA sequence Show only first row Show all	>Potri.012G059400.1 pacid=42782964 polypeptide=Potri.012G059400.1.p locus=Potri.012G059400 ID=Potri.012G059400.1.v4.1 annot-version=v4.1 MADRAPTQRATRPTTTPTTHNGSTFLRKLQVHIGSNSSQLVGLLTLIISGSILLLLTVITVTGSVLGLTLLTPLIIISSPIWIPIGIVLFFVVAGFLSFC GFGLAVVAGLSWVYKYFRGLNPPGSDQVDYARNRIYDTASHVKDYAREYGGYLQSKVKDAAPGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18570			Oleosin family protein (.1)		Potri.012G059400 [exp]	0	1
AT3G05975			Late embryogenesis abundant (L...		Potri.006G112700 [exp]	2.00	0.8433
AT3G26380			Melibiase family protein (.1)		Potri.010G048400 [exp]	3.74	0.7736
AT2G46300			Late embryogenesis abundant (L...		Potri.002G167300 [exp]	3.87	0.7851
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.006G253800 [exp]	4.47	0.7592
AT5G18590			Galactose oxidase/kelch repeat...		Potri.008G214900 [exp]	10.81	0.7524
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.001G068000 [exp]	17.86	0.7558
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G104700 [exp]	24.24	0.6702
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035200 [exp]	27.33	0.7907
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	27.60	0.7800
AT4G37080			Protein of unknown function, D...		Potri.005G136401 [exp]	28.14	0.7641

Compare expression of checked genes

Potri.012G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.