Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68795 59 / 2e-12 CLE12 CLAVATA3/ESR-RELATED 12 (.1) AT1G73965 53 / 3e-10 CLE13 CLAVATA3/ESR-RELATED 13 (.1) AT1G26600 45 / 6e-07 CLE9 CLAVATA3/ESR-RELATED 9 (.1) AT1G69320 44 / 2e-06 CLE10 CLAVATA3/ESR-RELATED 10 (.1) AT1G49005 42 / 6e-06 CLE11 CLAVATA3/ESR-RELATED 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G115600 [exp] 67 / 1e-15 AT1G73965 67 / 1e-15 CLAVATA3/ESR-RELATED 13 (.1) Potri.010G130400 [exp] 65 / 9e-15 AT1G68795 65 / 1e-14 CLAVATA3/ESR-RELATED 12 (.1) Potri.010G160600 [exp] 48 / 8e-08 AT1G69320 48 / 1e-07 CLAVATA3/ESR-RELATED 10 (.1) Potri.008G093500 [exp] 47 / 1e-07 AT1G69320 62 / 1e-13 CLAVATA3/ESR-RELATED 10 (.1) Potri.012G138200 [exp] 36 / 0.0008 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041496 [exp] 50 / 7e-09 AT1G68795 61 / 7e-13 CLAVATA3/ESR-RELATED 12 (.1) Lus10034267 [exp] 47 / 1e-07 AT1G68795 59 / 7e-12 CLAVATA3/ESR-RELATED 12 (.1) Lus10037107 [exp] 44 / 2e-06 AT1G73965 51 / 3e-09 CLAVATA3/ESR-RELATED 13 (.1) Lus10036960 [exp] 44 / 2e-06 AT1G69320 52 / 1e-09 CLAVATA3/ESR-RELATED 10 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G059600.1 pacid=42783183 polypeptide=Potri.012G059600.1.p locus=Potri.012G059600 ID=Potri.012G059600.1.v4.1 annot-version=v4.1 ATGAATATAGCCGTGAAAATCCCTCAATATTCCTTTAGTATCATTGCTTGGCTCTTTCTTTTCCTCTTCTTCTTTCACGGTTGGTGCTATTTCTTCCTCA ACAGCAATAACATCATCCACAACAATAACAACGTACACGTATCTCCTCGCACATTGAGCAATAGAAAAATGTTGGTTAGCAATGTTGACTTCACTGCTAT TATGAGCAGGCATCACCAGAGGCATATGCCGATGCACTCCGACCCAACCAGAGGTGAGATTGATCCACTTTATGGCGTTGAAAAACGACTTGTTCCAACT GGTCCAAACCCATTGCACCATTGA
AA sequence Show only first row Show all	>Potri.012G059600.1 pacid=42783183 polypeptide=Potri.012G059600.1.p locus=Potri.012G059600 ID=Potri.012G059600.1.v4.1 annot-version=v4.1 MNIAVKIPQYSFSIIAWLFLFLFFFHGWCYFFLNSNNIIHNNNNVHVSPRTLSNRKMLVSNVDFTAIMSRHHQRHMPMHSDPTRGEIDPLYGVEKRLVPT GPNPLHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.012G059600 [exp]	0	1
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	3.46	0.8271
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	4.47	0.7960
					Potri.006G265801 [exp]	5.19	0.7840
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	8.94	0.7812
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Potri.001G365432 [exp]	14.14	0.7221
AT5G24010			Protein kinase superfamily pro...		Potri.004G079700 [exp]	17.32	0.7781
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129400 [exp]	17.54	0.7589
					Potri.013G133550 [exp]	18.76	0.7712
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G015700 [exp]	19.89	0.7629
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.005G225800 [exp]	20.07	0.7625

Compare expression of checked genes

Potri.012G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.