Plant FIBer expression Database

Potri.012G059801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G059801.1 pacid=42783276 polypeptide=Potri.012G059801.1.p locus=Potri.012G059801 ID=Potri.012G059801.1.v4.1 annot-version=v4.1
ATGGTCCAACCACTTAAAGAAAAAAAGAGATATCTGTCAAGACATGGCTCCGAAATTCCAACTATGATTCCTGTCATTCATGGTGCAACTCAACCTTTGC
CTCCACTCAGAAATGCTTTCTTCTTCTCTCTCCTAGGGTTTTCTTTTTTCTTTTTTTCTTTTTTTCCTGGAAGTGAGGTAGCAGAATGTGATTCCCCACC
CAACACTCACTCTCTCCCTCTAGGGCTTCTTTTTTTATTCAAGAATTCCTCGAATCTAAACATGTTTGATCATATCTGCAGTCTCAGTACTGAAAATCCG
AATCTTTTATCAGTTTAA
AA sequence
>Potri.012G059801.1 pacid=42783276 polypeptide=Potri.012G059801.1.p locus=Potri.012G059801 ID=Potri.012G059801.1.v4.1 annot-version=v4.1
MVQPLKEKKRYLSRHGSEIPTMIPVIHGATQPLPPLRNAFFFSLLGFSFFFFSFFPGSEVAECDSPPNTHSLPLGLLFLFKNSSNLNMFDHICSLSTENP
NLLSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G059801
[exp]
0 1
AT2G41760 unknown protein Potri.006G051500
[exp]
4.58 0.8945
AT4G30420 nodulin MtN21 /EamA-like trans... Potri.006G177600
[exp]
6.70 0.8849
AT5G12460 Protein of unknown function (D... Potri.009G051701
[exp]
7.21 0.7935
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Potri.016G046200
[exp]
8.36 0.8587 FAD2.3
AT2G05940 RIPK RPM1-induced protein kinase, P... Potri.003G066300
[exp]
10.00 0.8685
AT2G21940 ATSK1 shikimate kinase 1 (.1.2.3.4.5... Potri.005G084600
[exp]
10.95 0.8459 SK2
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.005G223000
[exp]
13.03 0.8377
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.001G226904
[exp]
13.85 0.8561
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G218900
[exp]
14.14 0.8325
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.001G063709
[exp]
16.88 0.8419

Potri.012G059801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.