Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68800 84 / 1e-17 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT3G18550 82 / 8e-17 TCP AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2) AT1G67260 76 / 7e-15 TCP TCP1 TCP family transcription factor (.1.2) AT3G15030 68 / 2e-12 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT1G53230 68 / 3e-12 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT4G18390 67 / 5e-12 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT2G31070 67 / 6e-12 TCP TCP10 TCP domain protein 10 (.1) AT1G30210 60 / 6e-10 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT5G60970 57 / 7e-09 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT3G02150 57 / 1e-08 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050500 [exp] 409 / 1e-141 AT1G68800 86 / 2e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.010G130200 [exp] 96 / 3e-21 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.008G115800 [exp] 95 / 3e-21 AT1G68800 119 / 8e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.017G112000 [exp] 81 / 1e-16 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2) Potri.013G119400 [exp] 70 / 4e-13 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 69 / 8e-13 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 66 / 9e-12 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.011G096600 [exp] 66 / 1e-11 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.004G065800 [exp] 65 / 4e-11 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042962 [exp] 83 / 4e-17 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10032465 [exp] 80 / 4e-16 AT1G68800 92 / 2e-20 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 79 / 4e-16 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2) Lus10035055 [exp] 77 / 2e-15 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10000463 [exp] 68 / 3e-12 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10003078 [exp] 67 / 4e-12 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 67 / 6e-12 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10023297 [exp] 62 / 4e-10 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10038512 [exp] 62 / 5e-10 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 54 / 8e-08 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.012G059900.1 pacid=42782670 polypeptide=Potri.012G059900.1.p locus=Potri.012G059900 ID=Potri.012G059900.1.v4.1 annot-version=v4.1 ATGTTTCCATTAAGCTACAATGCCAACGACGCCATCTCCTGTAGTGATCAACAAGCTTATAACATGCCCTTGTTCAGTGATATCATTTCCTATCCCAAAC AAGATGTCCCTCCTCCTTTATCTCTCTGCTTGCCCTCTCCTTTTATCCCTTGTGATCAGCAAGAATTTGAAGACCATCTTATTTTTCTCCAACAAAACTA TGACCTTTTTTTTCAGGAGCAACCCTTGAGAGCTACAGCTACTAGTACTAATCTATCCCAGAGTACTGTTGTTAATAACATGGCGGATTCCAATAAAAGT GCCGTTATTGAGCTAGCCGGAATCTGCAACAAGAAATCCAACAACAGCACTGATCAGATCCTAAGAAAGAGATCTTCAAAGAGAGATCGGCATAGCAAGA TTAACACGGCTCAAGGACCAAGAGATCGGAGAATGAGATTGTCACTAAAGGTTGCCAGAGAGTTCTTTGATCTGCAAGACAAGCTACGCTTTGATAAAGC TAGCAAGACTGTTGAATGGTTACTCATACAGGCAAAGAATGAAATCAAGAAACTATCCAGTGGCTCCCCCCATATGAATTATAGCGGCAGTGATGGCACC AAGAGTGCATCTTCTACTTCTGAGCGTGAAATGCTGACCGAAATCAATATTGAAACTACCACGAAAGGGAGGAATGTTTCCAAGGGTAGATCCTCACCAT GTGTCAAGAAAGAGAGGACTAGGAGAGCATCATCGCGTAAAACTCCATTCAACCCTTTTGCAAAGGAATCAAGGGAGAAGGCAAGAGCAAGAGCGAGGGA GAGAACGAAAGAAAAGTACTTGTGCAGTCGAAGAATCGACAAATTGAAGTTTTCTGAAGAATCATCAAACAATGAATTGAATCAATTCGCAGGTTGTTGG GATACTCCATTAGAAACTGGTGATCAAGAATCTGGCACTCACAATTTTAATCCTTCCTTAGAAGTTCAGCTAGCTGAAGTTGATGTGGCAATCTATCACG AGCGAGAGAAATTACGTACTCCAGAGGGCATGATTGATGAAAACTTGGTGATTATGGGCAAGTACTGGAGTCCCTCTTTTCTCAATAATCTGCACAACAC TGGAACTCCTGATCAGGAGCATCAATTCTCAGACTTTCAATACAAGACATGGGATCAGGCATGCACCATTGGCAGTATGTGCTAG
AA sequence Show only first row Show all	>Potri.012G059900.1 pacid=42782670 polypeptide=Potri.012G059900.1.p locus=Potri.012G059900 ID=Potri.012G059900.1.v4.1 annot-version=v4.1 MFPLSYNANDAISCSDQQAYNMPLFSDIISYPKQDVPPPLSLCLPSPFIPCDQQEFEDHLIFLQQNYDLFFQEQPLRATATSTNLSQSTVVNNMADSNKS AVIELAGICNKKSNNSTDQILRKRSSKRDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLIQAKNEIKKLSSGSPHMNYSGSDGT KSASSTSEREMLTEINIETTTKGRNVSKGRSSPCVKKERTRRASSRKTPFNPFAKESREKARARARERTKEKYLCSRRIDKLKFSEESSNNELNQFAGCW DTPLETGDQESGTHNFNPSLEVQLAEVDVAIYHEREKLRTPEGMIDENLVIMGKYWSPSFLNNLHNTGTPDQEHQFSDFQYKTWDQACTIGSMC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.012G059900 [exp]	0	1
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.015G050500 [exp]	9.64	0.6976
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	15.09	0.6639
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G313500 [exp]	15.49	0.6869	ERF52
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077500 [exp]	17.32	0.7089	Pt-VI1.1
AT4G36600			Late embryogenesis abundant (L...		Potri.007G024000 [exp]	21.44	0.6872
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.006G040900 [exp]	52.53	0.6553
AT4G13540			unknown protein		Potri.008G174400 [exp]	66.69	0.6580
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	83.16	0.6275
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	83.96	0.5973
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	85.86	0.6432

Compare expression of checked genes

Potri.012G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.