Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MSH2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18524 1439 / 0 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 192 / 4e-50 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 184 / 3e-48 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 183 / 1e-47 ATMSH5 MUTS-homologue 5 (.1) AT3G24495 181 / 2e-46 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 176 / 6e-45 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT5G54090 91 / 2e-18 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 86 / 1e-16 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT1G65070 64 / 5e-10 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142900 [exp] 215 / 2e-57 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.006G156314 [exp] 189 / 3e-49 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 189 / 4e-49 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G159200 [exp] 187 / 1e-48 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 186 / 1e-48 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 184 / 5e-48 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.008G191051 [exp] 94 / 3e-21 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G005000 [exp] 87 / 3e-17 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.010G065000 [exp] 84 / 3e-16 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042967 [exp] 1534 / 0 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 1505 / 0 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 195 / 5e-55 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10005743 [exp] 204 / 8e-54 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10010010 [exp] 176 / 9e-45 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10017724 [exp] 172 / 1e-43 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10007489 [exp] 150 / 2e-37 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10028966 [exp] 143 / 3e-36 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10033095 [exp] 141 / 6e-34 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10025030 [exp] 121 / 1e-27 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0023 [poplar] [flax] PF01624 [poplar] [flax] MutS_I MutS domain I CL0023 [poplar] [flax] PF05188 [poplar] [flax] MutS_II MutS domain II CL0023 [poplar] [flax] PF05190 [poplar] [flax] MutS_IV MutS family domain IV CL0023 [poplar] [flax] PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.012G060000.1 pacid=42784356 polypeptide=Potri.012G060000.1.p locus=Potri.012G060000 ID=Potri.012G060000.1.v4.1 annot-version=v4.1 ATGGGTGAAAATAAAAATTTTGAAGAACAGAACAAGCTCCCTGAGCTCAAGCTAGATGCTAAGCAGGCTCAAGGGTTTCTCTCTTTCTTCAAAACCCTAC CCCATGACCCTAGGGCGGTTCGGGTCTTTGATAGGCGGGACTATTATACAGTTCATGCTGAAAATGCGACCTTCATTGCAAAGACATACTACCACACTAC GACTGCTTTGCGCCAGTTGGGGAGTGGATCTAATGGTCTTTCTAGTGTGAGCATTAGTAAGAACATGTTTGAAACAATTGCCCGGGATCTTCTTTTGGAG AGAACAGACCATACTCTTGAGCTCTATGAAGGGAGTGGATCCAATTGGAAACTAGTGAAAAGTGGGACTCCTGGAAATCTTGGCAGTTTTGAAGATGTTT TGTTTGCAAACAATGACATGCAGGATTCTCCTGTGGTTGTTGCACTCTTGTTAAACTTCCGTGAAAAAGGGTGCACTGTTGGGTTGAGTTATGTTGATTT AACAAAAAGAGTTCTTGGGCTGGCTGAATTTCTAGATGATAGCCACTTTACAAATGTGGAGTCAGCTTTAGTTGCCCTCAGTTGCAAGGAATGCCTTTTG CCCATGGAGAGTGGCAAGTCCAATGACTGTAGAACTCTGCATGATGTTTTGACCAAATGCGGTGTGATGTTAACTGAGAGAAAGAAAAATGAATTCAAAA CAAGAGATTTGGTGCAGGATCTTGGTAGGCTTGTCAAAGGTCCCCTTGAACCAGTCCGAGATCTAGTTTCTGGTTTTGAATTTGCACCTGGTGCTTTGGG AGCATTATTGTCCTATGCAGAATTACTTGCAGACGAGAGCAATTATGGTAATTATAGAATTAGAAAGTACAATCTTGACAGCTACATGAGACTTGATTCT GCTGCCACGAGGGCACTGAATGTCCTTGAAAGCAAAACTGATGCAAACAAAAATTTTAGTTTATTTGGTCTCATGAATAGAACTTGTACAGCTGGAATGG GAAAAAGATTGCTTCATATGTGGCTAAAACAGCCTTTATTGGAAGTAGATGCAATCAACTCCAGGCTAGATTTGGTGCAGGCATTTGTGGACGATACCGG GCTTCGCCAAGATCTAAGACAGCATCTGAAAAGAATCTCAGATATTGAACGACTGATGCACATTGTTGAGAAAGGAAGAGCTGGCTTGCACCATATTGTG AAACTTTATCAGTCCATCATAAGACTGCCATACATTAAAGGTGCTCTGGAACGATATGATGGCCAATTTTCATCCCTTATCAAGGAAAAGTATTTGGAGT CCCTTGAGGTGTGGACTGATGATAACCACTTGAATAAGTTCATTGCTCTTGTGGAAACTGCTGTTGACCTAGATCAACTTGACAATGGGGAATACATGAT TTCACCTGGTTATGAAGCTGCCTTAGGTGCACTAAAAGCTGAACAGGAGTCATTGGAGCACCAGATACACAATTTGCATAAACAAACTGCTTCCGATCTT GACCTTCCTCTAGATAAGGGATTGAAGTTAGATAAGGGAACGCAATACGGTCATGTCTTCCGAATTACAAAGAAGGAAGAGCCAAAAATACGGAAAAAGC TGACCACCCAGTTTATTGTCCTTGAAACTCGTAAGGATGGGGTAAAATTCACAAACACGAAACTTAAAAAATTAGGTGACCAGTACCAAAAGATAGTTGA GAACTATAAGAGTCGTCAGAAGGAGCTTGTCAGTCGAGTGGTTCAAATTACAGCAACTTTCTCTGAGGTGTTTGAGAAATTATCTGGCTTGCTTTCTGAA ATGGATGTCTTACTTAGTTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCATACACAAGGCCTGACATCACTCCATCTGATGTGGGAGATATTATATTAG AAGGGAGTAGACATCCATGTGTGGAAGCTCAGGATTGGGTGAATTTTATTCCAAATGATTGTAAACTTGTCAGGGGAAAGAGTTGGTTCCAAATAATCAC AGGGCCTAATATGGGTGGGAAATCCACATTTATTCGGCAAATAGGTGTGAATATTCTCATGGCCCAAGTTGGTTCTTTCATTCCCTGTGACAAGGCTACC ATTTCTGTACGTGATTGCATTTTTGCACGTGTGGGTGCTGGTGATTGTCAAATGCGTGGAGTTTCTACTTTTATGCAAGAAATGCTTGAAACTGCTTCAA TCCTTAAAGGAGCTACAGATAGGTCATTGATAATCATTGATGAGTTAGGCCGCGGGACATCAACTTATGATGGATTTGGCTTGGCATGGGCCATATGTGA ACACCTGGTTCGAGAGTTAAAAGCACCTACTTTATTTGCAACCCACTTTCACGAACTGACTGCATTAGCTCATCAAAAACCTGACCAGGAGCCACATGCG AAGCAAATTGTTGGTGTTGCAAACTATCATGTCAGTGCACACATCGACTCATCAAATCACAAGTTGACCATGCTGTACAAGGTTGAGCCAGGGGCTTGTG ATCAAAGTTTTGGTATTCATGTTGCAGAATTTGCAAACTTTCCTGAAAGTGTTGTCACCCTTGCCCGAGAAAAGGCAGCTGAATTGGAAGATTTCTCACC TACTGCAATCATTTCAGATGATGCTAGAGAAGAGGTCGGATCCAAACGAAAGAGAGAGTGCAATATGGATGATATGTCAAAAGGTGCAGCTCGGGCTCAC CGGTTTCTGAAGGACTTCTCTGATTTGCCATTAGACACAATGGACTTGAAGCAGGCTCTGCTACAGATAGGCAAACTGAAAGATGACTTGGAGAAAGATG CAGTGAATTGCCATTGGCTCCAGCAATTCTTCTAG
AA sequence Show only first row Show all	>Potri.012G060000.1 pacid=42784356 polypeptide=Potri.012G060000.1.p locus=Potri.012G060000 ID=Potri.012G060000.1.v4.1 annot-version=v4.1 MGENKNFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIAKTYYHTTTALRQLGSGSNGLSSVSISKNMFETIARDLLLE RTDHTLELYEGSGSNWKLVKSGTPGNLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDDSHFTNVESALVALSCKECLL PMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQDLGRLVKGPLEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYRIRKYNLDSYMRLDS AATRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQAFVDDTGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIV KLYQSIIRLPYIKGALERYDGQFSSLIKEKYLESLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPGYEAALGALKAEQESLEHQIHNLHKQTASDL DLPLDKGLKLDKGTQYGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKIVENYKSRQKELVSRVVQITATFSEVFEKLSGLLSE MDVLLSFADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQIGVNILMAQVGSFIPCDKAT ISVRDCIFARVGAGDCQMRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVRELKAPTLFATHFHELTALAHQKPDQEPHA KQIVGVANYHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTAIISDDAREEVGSKRKRECNMDDMSKGAARAH RFLKDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	0	1	Pt-MSH2.1
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	2.23	0.9176
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	2.82	0.9138	CYCA3.1
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	3.00	0.9120	Pt-ATBRCA1.1
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	3.46	0.9033
AT3G56870			unknown protein		Potri.014G181200 [exp]	4.47	0.8844
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Potri.003G169300 [exp]	4.89	0.8649
AT1G06475			unknown protein		Potri.002G058400 [exp]	10.90	0.8615
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.002G044800 [exp]	11.53	0.8108
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	11.83	0.8456	HFO909
AT4G15790			unknown protein		Potri.010G024600 [exp]	12.00	0.8495

Compare expression of checked genes

Potri.012G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.