Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18470 673 / 0 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G73950 669 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 621 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT4G39050 59 / 7e-09 Kinesin motor family protein (.1) AT2G21380 56 / 6e-08 Kinesin motor family protein (.1) AT3G12920 52 / 6e-07 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G10650 46 / 2e-05 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT2G35330 45 / 8e-05 RING/U-box superfamily protein (.1.2) AT5G19080 45 / 8e-05 RING/U-box superfamily protein (.1) AT3G06140 44 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050300 [exp] 791 / 0 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 599 / 0 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.010G129932 [exp] 114 / 2e-30 AT1G68820 120 / 5e-33 Transmembrane Fragile-X-F-associated protein (.1) Potri.004G161100 [exp] 57 / 2e-08 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 56 / 4e-08 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.014G138000 [exp] 50 / 2e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.005G093000 [exp] 49 / 9e-06 AT5G23110 5932 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G042200 [exp] 47 / 2e-05 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.003G090000 [exp] 46 / 4e-05 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032471 [exp] 671 / 0 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10042969 [exp] 668 / 0 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10021710 [exp] 566 / 0 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 565 / 0 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Lus10027994 [exp] 57 / 8e-09 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10017969 [exp] 56 / 8e-08 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 55 / 1e-07 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10008163 [exp] 52 / 6e-07 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10001530 [exp] 47 / 3e-05 AT5G23110 5981 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10031780 [exp] 46 / 5e-05 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10269 [poplar] [flax] Tmemb_185A Transmembrane Fragile-X-F protein CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.012G060100.1 pacid=42782987 polypeptide=Potri.012G060100.1.p locus=Potri.012G060100 ID=Potri.012G060100.1.v4.1 annot-version=v4.1 ATGATGGGCTGGCGAAGAGTATTGAAATCTTTACAGGCACTGGCCGCCCACAGTCTTCTCTTTTCTTTCACTCTCTTCCTCGTCCTCAAGCTTGATCACG TCGCCTCCTACTCCTGGTGGTTAATATTCTTCCCACTCTGGACATTCCATGGAGTTGTTGCTCGAGGAAGATTTGCATTACCTGCCCCATCAGTTCCACA TAATCGTCATTGGGCGCCGTGCCATGCGGTTGTGGCAACACCATTGCTTATTGCATTTGAACTGCTTCTTTGTATATATCTCGAAAGCGTTTATGTTTAT CATATTCCAGCTGTAAACTTGAAGATTGTCTTTATTCCATTGTTGGCATTTGAAATAATTATTTTAATTGACAATTTCAGAATGTGTAAGGCTCTAATGC CAGGGGAAGAAGAAAGCATCAGTGATGAAGCGATATGGGAAACATTGCCTCACTTCTGGGTTGCAATTTCCATGGTTTTCTTTGTGGCTGCTACAGTCTT TACCCTCCTAAAGCTGTGCGGTGATGTGGGTGCACTTGGCTGGTGGGACTTGTTCATAAACTTTAGCATTGCAGAGTTCTTTGCCTTTCTCGTTTGTACG AAATGGTCTAATCCAGCGATCCACAGAAATTCTCGGACAAGAGAAGTTAGTTCATCTTCAACGACCATTAGATATCTTGATTGGAATGGTGGCTTAATGG TTTCTCCCGAGGAGAATCAACACCAGGACAGAATGTGCGGTCTGCAAGAAATTGGTGGCCATATTATGAAAATTCCTTTAATTGGTTTCCAAGTTCTACT TTTTATGCATTTAGAGGGAAGACCTACTGGTGCTAGAAATTTACCATTTTTGGTTCTTTTCTCTCCACTTTTCCTACTTCAAGGAGCTGGTGTATTGTTT GCTGCTTCTAAGTTGGCAGAAAAGCTTATTCTTTTATTGCGGAGCGAAGCTGGCACAGGAAGATATTTTAGATTTTCCTCAAGAGCTCATGACTGCTTGG GGTTCTTGCATCATGGTTCCAGGCTGCTGGGCTGGTGGTCAATTGATGAGGGAAGTCGAGAGGAACAGGCTCGATTGTACCATGGGGGAGATGCTGGTTA TAATACTTTCTGTGGTTATCCTCCTGAGATAGTGAAGAAAATGCCTAAAAAGGATCTCGCTGAGGAGGTGTGGAGGCTGCAGGCAGCTCTTGGTGAGCAG ACAGAAATCACAAAATACAGCCAGCAGGAGTTTGAAAGACTTACAAATGAAAAAGTTTTATGTAGGGTGTGCTTTGAGGGAGAGATCAGTGTGGTTCTGC TCCCCTGTAGACATCGTATCCTTTGCAGCACCTGCTGTGAGAAGTGTAAAAAATGTCCAATTTGTCGTGTCTCTGTCGAGGAGTGCTTATCTGTGTACGA CGTTTAG
AA sequence Show only first row Show all	>Potri.012G060100.1 pacid=42782987 polypeptide=Potri.012G060100.1.p locus=Potri.012G060100 ID=Potri.012G060100.1.v4.1 annot-version=v4.1 MMGWRRVLKSLQALAAHSLLFSFTLFLVLKLDHVASYSWWLIFFPLWTFHGVVARGRFALPAPSVPHNRHWAPCHAVVATPLLIAFELLLCIYLESVYVY HIPAVNLKIVFIPLLAFEIIILIDNFRMCKALMPGEEESISDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGDVGALGWWDLFINFSIAEFFAFLVCT KWSNPAIHRNSRTREVSSSSTTIRYLDWNGGLMVSPEENQHQDRMCGLQEIGGHIMKIPLIGFQVLLFMHLEGRPTGARNLPFLVLFSPLFLLQGAGVLF AASKLAEKLILLLRSEAGTGRYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHGGDAGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQ TEITKYSQQEFERLTNEKVLCRVCFEGEISVVLLPCRHRILCSTCCEKCKKCPICRVSVEECLSVYDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.012G060100 [exp]	0	1
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.011G001000 [exp]	4.00	0.7844	TOM1.1
AT1G70590			F-box family protein (.1)		Potri.010G045300 [exp]	6.00	0.7624
AT5G63520			unknown protein		Potri.015G098700 [exp]	8.12	0.7752
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	14.49	0.7498
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.008G136040 [exp]	16.61	0.7694
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Potri.012G063400 [exp]	16.79	0.7041
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.003G110901 [exp]	19.97	0.7599
AT2G15230		ATLIP1	lipase 1 (.1)		Potri.009G094900 [exp]	21.97	0.6880
AT1G13310			Endosomal targeting BRO1-like ...		Potri.010G128700 [exp]	26.15	0.7303
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.015G086600 [exp]	28.33	0.6854

Compare expression of checked genes

Potri.012G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.