Plant FIBer expression Database

Potri.012G060200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73930 846 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G049900
[exp]
1097 / 0 AT1G73930 865 / 0.0 unknown protein
Potri.001G289250
[exp]
55 / 1e-09 AT1G73930 55 / 8e-11 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032474
[exp]
891 / 0 AT1G73930 957 / 0.0 unknown protein
Lus10042970
[exp]
890 / 0 AT1G73930 955 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0330 AVL9 PF08616 SPA Stabilization of polarity axis
Representative CDS sequence
>Potri.012G060200.2 pacid=42782568 polypeptide=Potri.012G060200.2.p locus=Potri.012G060200 ID=Potri.012G060200.2.v4.1 annot-version=v4.1
ATGCTGATTATCTCGGAAATGAGTCGATCACCTTCATTTTCTGTTAAACAGGAGCTTAGTTTAAAGACTGATCTGGAATCTCTGCAGCAATGGGCTGTTG
CCTTCTGCATTATTAGATTTGATCTTGAACAAGGTCAGCTCATTGAAGAGTGTTATCCACCTGGTTCTCTCTCAAATGAAGAGGAACTTGATGTTGCTTT
TAGTTCATTTCCAGATTCTGTTTCCCAGAACCAGAACCGTTCAAGCATTCATGACTGCATATTCTTTTTTCGCATCCAAAGGCGGAAGAACTCTGAACAA
GGAAATGTGACTTCTTCTGAGGTAGTAGGAATTGATGATGAAGAAGAATCTTCAAAGTCCATGAAAGGGAAGGTGATTAATAGAAGAAAAATTAGAAATG
GTACCAAAGGTTTGAAATACTTGTATGGTTTTGTATTTAATAGGCAGCGGCATGATGAGAAGCTAAAGCGAGGTGGAGAACAGAAATCTGTGGTGATATT
GTCTCATAATCCTTACTCTAGTGTGTTTAGGCCTTTGTTACAAATTATGGGTCCTTTATATTTTGATGTAGGAACGAAAGCTCTTGAGCATATTGCTGCT
TATGTTTCAATGTGGCCTACTCCTGTACCCGGTAAACAAATGGAGCTTCATATTGGGAATGCCATGCTTAAAGTTAGCCTGCCACCCGCTCACAGTCTGC
CCTTTGAAATTGGGATTTTTGAAGAATCTGCTTCTGCCATGGCACCTTTTCTTCCATCTAATCAGTTAATTCCACAGGGTCTTTTTCATGATTCAGATAT
TTTTGGTACATTCCGGGGGATCTTATTGCAGCTCTGGTTGTTATGGGAGTTGTTGCTTATCGGTGAACCTATTCTTATCATAGGACCTACACCTCCCCAG
TGCTGTGAGGCAGTTGCAAGTCTAGTCAGTTTGGTTGCACCACTGCCATGTAGTGTTGATTTTAGGCCATATTTCACCATCCATGACCCTGACTTTAAGC
ATTTGAATTCACTTAAAGAAGGAGACGCATTCCCTCCAATGGTTTTGGGTGTGACAAATCTATTTTTCCTTAAAGCACTTCGTAATATTCCCCACATTGT
TTCAGTTGGCAGCCCTGCTTCTAATTCAAACCGGGTTGCCTTTGCAAGTAGGTCTTCTGCTAGCAGAATTCCTGGAACACCAGAAGGATTTGGTCTTCAG
CAGCTTTCCTTGAAAAAGTTCTCTCCTTCAAGTTTGTTGAGTGCTGTTAAGTTGAGGAGAGATGGTCCGCTATGCCTCATGACAGAACACAAGGAAGCCG
TTTGGAGTACCTATGTAGCTTCAACTAAGCCTGACACTTCTATCTTGAATAGGCTCATTGATGCTGGGAAGTCACCGAGGGTTGAGGAGTCAATGTCAGT
TGTTAACAATGAAATATTGCGCCGTCATTTCTTGGAGCTCACCACAAACTTCTTGGCTCCTTTTGGCCCATATTTTAGGGCGAGCACTCCTTCTGAAGGA
TCTCTTCCATTCATTGACCCTCCCCCTCTTCCTCCATTCGACGTCGAAGAATTTCTGGCAAACTTATCAGCAAGAGGTGTGGGGAAATTTTTGTCAAAGC
GGATGAAATCTAATTGGCTGGATTTATACAAGAGGTTCCTGAAAGGGCCCAACTTCATGCCATGGTTTCAAAGGCGGCGCACTGTTGTTGAACAAGAACA
ACATAGGCTCTGGAGGCAGGCAAGAATGAAAGCTGACATACAGCTTCTCATGTCAAGAATGTCAGAATTGGAAATTGTTGATTCTTTCAATTCTATTGAA
AGACATCTCCATGGAGAAATTCTGATGGAGAAGTCAGGAAAGGCTGGTGTAGACTTTGCAGAAACTTGCCAGAAATTGAAGAAAGATCTGCAGGCAGTGT
TCGATGTCCTTCCTAAAGACATGCAGCAGCTTCTGCTTATGAACCCTGAAAGAGCAGCTCTTTTACAAGTAAGTTGGGAGCCAACAAAACTTACTGGCCA
CCCATCGTTTCAAATTGGGGCTGTATCTTCCAGATCACCAAGATAA
AA sequence
>Potri.012G060200.2 pacid=42782568 polypeptide=Potri.012G060200.2.p locus=Potri.012G060200 ID=Potri.012G060200.2.v4.1 annot-version=v4.1
MLIISEMSRSPSFSVKQELSLKTDLESLQQWAVAFCIIRFDLEQGQLIEECYPPGSLSNEEELDVAFSSFPDSVSQNQNRSSIHDCIFFFRIQRRKNSEQ
GNVTSSEVVGIDDEEESSKSMKGKVINRRKIRNGTKGLKYLYGFVFNRQRHDEKLKRGGEQKSVVILSHNPYSSVFRPLLQIMGPLYFDVGTKALEHIAA
YVSMWPTPVPGKQMELHIGNAMLKVSLPPAHSLPFEIGIFEESASAMAPFLPSNQLIPQGLFHDSDIFGTFRGILLQLWLLWELLLIGEPILIIGPTPPQ
CCEAVASLVSLVAPLPCSVDFRPYFTIHDPDFKHLNSLKEGDAFPPMVLGVTNLFFLKALRNIPHIVSVGSPASNSNRVAFASRSSASRIPGTPEGFGLQ
QLSLKKFSPSSLLSAVKLRRDGPLCLMTEHKEAVWSTYVASTKPDTSILNRLIDAGKSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRASTPSEG
SLPFIDPPPLPPFDVEEFLANLSARGVGKFLSKRMKSNWLDLYKRFLKGPNFMPWFQRRRTVVEQEQHRLWRQARMKADIQLLMSRMSELEIVDSFNSIE
RHLHGEILMEKSGKAGVDFAETCQKLKKDLQAVFDVLPKDMQQLLLMNPERAALLQVSWEPTKLTGHPSFQIGAVSSRSPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73930 unknown protein Potri.012G060200
[exp]
0 1
AT1G56460 HIT zinc finger ;PAPA-1-like c... Potri.005G014000
[exp]
2.82 0.7878
AT5G24710 Transducin/WD40 repeat-like su... Potri.006G081800
[exp]
5.91 0.8616
AT3G17900 unknown protein Potri.010G033900
[exp]
19.44 0.7231
AT3G50590 Transducin/WD40 repeat-like su... Potri.007G041000
[exp]
23.49 0.8007
AT4G20850 TPP2 tripeptidyl peptidase ii (.1) Potri.012G142200
[exp]
24.16 0.6858
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.006G147800
[exp]
25.13 0.7776
AT3G55480 AP-3beta, PAT2 beta-subunit of adaptor protei... Potri.010G202800
[exp]
27.05 0.7205
AT4G03340 Core-2/I-branching beta-1,6-N-... Potri.019G104600
[exp]
31.60 0.7766
AT3G63150 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-... Potri.005G209000
[exp]
31.74 0.7532
AT5G16280 Tetratricopeptide repeat (TPR)... Potri.016G068800
[exp]
36.22 0.7399

Potri.012G060200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.