Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18520 636 / 0 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61060 241 / 3e-71 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 234 / 2e-68 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT4G33470 152 / 3e-40 HDA14, ATHDA14 histone deacetylase 14 (.1) AT1G08460 123 / 2e-30 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G63110 95 / 2e-20 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G09784 84 / 1e-19 unknown protein AT3G44680 87 / 6e-18 HDA09, HDA9 histone deacetylase 9 (.1) AT4G38130 83 / 2e-16 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G26040 50 / 2e-06 HDA2 histone deacetylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092900 [exp] 246 / 7e-73 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.005G064200 [exp] 151 / 4e-40 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.009G020500 [exp] 128 / 2e-32 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.012G083800 [exp] 98 / 1e-21 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.015G082500 [exp] 97 / 3e-21 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.004G209800 [exp] 89 / 2e-18 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.001G460000 [exp] 88 / 2e-18 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.009G170700 [exp] 87 / 7e-18 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.006G230300 [exp] 55 / 7e-08 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024919 [exp] 655 / 0 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 619 / 0 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 233 / 7e-68 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 228 / 6e-66 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10010889 [exp] 150 / 7e-40 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10013343 [exp] 140 / 2e-36 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10001850 [exp] 139 / 5e-36 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10012713 [exp] 108 / 5e-25 AT4G33470 508 / 2e-180 histone deacetylase 14 (.1) Lus10043337 [exp] 101 / 1e-22 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10019486 [exp] 100 / 3e-22 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [poplar] [flax] Arginase PF00850 [poplar] [flax] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Potri.012G060400.22 pacid=42782653 polypeptide=Potri.012G060400.22.p locus=Potri.012G060400 ID=Potri.012G060400.22.v4.1 annot-version=v4.1 ATGGGTTCTGAAACAATTAAAACAGGTCGTTTAGCAAATGGGGAGGCTCAGAAGAGTGTTCACAAAGAAAGGCGTGGTCTTTCCAGTAATGGTATGAATG GCAAACATGAAAACTTGGGTTCTAATCGAGCTGGAACTAGTTCAAGTGGTGAAGATTATGATTTAATGATGAATACGGGAGATGTAGATGGCAACTTAGA CGGTGACGTAGAACCTGTTTTTAGAAAGGCTAGACAGGGAGACTTGACATTTCAGGACATTCATGACAACAGAGATTTCTTTGATGAAGACGATGAAGAC GACAGTGACTGGGAGCCTGTGCAAAAGCATGTAGAGCTTATAAAGTGGTTTTGCGTCAACTGCACTATGGTTAATCTTGGCGATGGTGTCATCTGTGATT TATGTGGTGAACATAAAGATTCTGGTATTTTGAGGCTGGGGTGCTTTGCATCTCCTTCATCACAAGACGCAGGTTGCAGTGAGGTTGAGTCAGAAATGAA AGGAAAAAACAAAGAGATGCACTCACAACTTTCAGCCTCCAACAGTTTGACAGCAATTGGTTTTGATGAGAGGATGTTGCTACACTCAGAGGTCCAAATG AAGTCACATCCCCACCCAGAACGATCTGATCGCCTTCGAGCTATTGCTGCTAGCCTTGCTACTGCTGGGTTATTTCCTGGAAGATGCTACCCAATTTCTG CAAGAGAGATTACCCGAGAAGAACTTCAAATGGTGCATTCGTTGGAACACATTCAAGATGTAGAACTCACAAGCCATATTTTCTCCAGTTATTTCACTCC TGACACGTATGCTAATGAGCATTCAGCATGTGCTGCTAGGCTTGCGGCAGGATTGTGTGCTGATCTTGCTTCAACAATTTTCTCAGGATGGGTGAAAAAT GGTTTTGCTATGGTTCGGCCTCCTGGCCATCATGCTGGTGTAAGAGAGGCAATGGGATTCTGTCTTCATAATAATGCTGCAGTTGCTGCGTTAGCTGCTC AGGCTGCTGGTGCCAAGAAGGTGCTTATAGTTGATTGGGATGTCCATCATGGAAATGGCACACAAGAAATTTTTGATCAGAACAAATCGGTTTTATACAT ATCTTTGCATAGACATGAGGGGGGAAAGTTCTATCCTGGCACTGGCTCTGCTAATGAGGTTGGTAGAAATGGTGCAGAAGGATCCTGTGTAAATATTCCC TGGAGTCGTGGTGGAGTTGGTGATAATGATTATATTTTTGCTTTTCAAAACCTTGTGCTACCTATAGCCACTGAGTTTGCTCCAGATTTCACCATCATAT CAGCTGGATTTGATGCTGCAAGGGGGGATCCTCTAGGATGCTGTGATGTAACTCCTGCTGGCTATTCACGAATGACAGATATGTTGTATACTCTTACTGG TGGAAAGTTGCTTGTTATTCTAGAGGGCGGATACAATCTACGCTCAATATCATCTTCTGCCACCTCAGTGATCAAGGTATTGCTGGGTGAAGGTCCTGGA TCTGAATTGGGAAACATTGCACCTTCCAGAGCTGGTCTTCAAACTGTTCTGGAAGTCATGAAGATTCAAATGAACTTCTGGCCATCTCTTGGATCTAGCT ATGCAAAATTGCAATCCCAATGGGGAGCATACTGCAATACAAGAAAACAAATAAAAAAGCGGCAGAGGACTGAACCACCCATATGGTGGAAATGGGGAAG AAAGAGGCTGTTGTATCATATCCTTGTTAGGCGTCTTCATGTAAAATCGAGGGGGAAACCTTCTCTTCATTCATCGTAG
AA sequence Show only first row Show all	>Potri.012G060400.22 pacid=42782653 polypeptide=Potri.012G060400.22.p locus=Potri.012G060400 ID=Potri.012G060400.22.v4.1 annot-version=v4.1 MGSETIKTGRLANGEAQKSVHKERRGLSSNGMNGKHENLGSNRAGTSSSGEDYDLMMNTGDVDGNLDGDVEPVFRKARQGDLTFQDIHDNRDFFDEDDED DSDWEPVQKHVELIKWFCVNCTMVNLGDGVICDLCGEHKDSGILRLGCFASPSSQDAGCSEVESEMKGKNKEMHSQLSASNSLTAIGFDERMLLHSEVQM KSHPHPERSDRLRAIAASLATAGLFPGRCYPISAREITREELQMVHSLEHIQDVELTSHIFSSYFTPDTYANEHSACAARLAAGLCADLASTIFSGWVKN GFAMVRPPGHHAGVREAMGFCLHNNAAVAALAAQAAGAKKVLIVDWDVHHGNGTQEIFDQNKSVLYISLHRHEGGKFYPGTGSANEVGRNGAEGSCVNIP WSRGGVGDNDYIFAFQNLVLPIATEFAPDFTIISAGFDAARGDPLGCCDVTPAGYSRMTDMLYTLTGGKLLVILEGGYNLRSISSSATSVIKVLLGEGPG SELGNIAPSRAGLQTVLEVMKIQMNFWPSLGSSYAKLQSQWGAYCNTRKQIKKRQRTEPPIWWKWGRKRLLYHILVRRLHVKSRGKPSLHSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Potri.012G060400 [exp]	0	1
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	2.44	0.8253
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Potri.006G116500 [exp]	3.00	0.8432
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	3.74	0.7965
AT3G49000			RNA polymerase III subunit RPC...		Potri.015G144900 [exp]	4.69	0.8339
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	8.12	0.7807	SDG916,Pt-CLF.2
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.014G000700 [exp]	10.67	0.7637
AT5G52545			unknown protein		Potri.004G079400 [exp]	11.18	0.8131
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	11.83	0.7883
AT1G02960			unknown protein		Potri.002G208058 [exp]	14.07	0.7921
AT1G66590		ATCOX19-1	A. THALIANA CYTOCHROME C OXIDA...		Potri.001G187200 [exp]	14.14	0.7943

Compare expression of checked genes

Potri.012G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.