Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73920 916 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18460 901 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G14180 91 / 2e-19 MPL1 Myzus persicae-induced lipase 1 (.1) AT2G15230 69 / 3e-12 ATLIP1 lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159900 [exp] 113 / 8e-27 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159800 [exp] 108 / 5e-25 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.001G332300 [exp] 83 / 1e-16 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 77 / 1e-14 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.009G094900 [exp] 71 / 1e-12 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.017G069700 [exp] 58 / 1e-08 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032476 [exp] 957 / 0 AT1G73920 881 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042973 [exp] 551 / 0 AT1G73920 498 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032477 [exp] 541 / 0 AT1G73920 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042972 [exp] 340 / 4e-113 AT1G18460 335 / 5e-112 alpha/beta-Hydrolases superfamily protein (.1) Lus10015159 [exp] 104 / 1e-23 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 102 / 6e-23 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10023171 [exp] 99 / 6e-22 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 88 / 4e-18 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10038378 [exp] 85 / 2e-17 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10041571 [exp] 81 / 9e-16 AT5G14180 525 / 0.0 Myzus persicae-induced lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF04083 [poplar] [flax] Abhydro_lipase Partial alpha/beta-hydrolase lipase region
Representative CDS sequence Show only first row Show all	>Potri.012G060600.2 pacid=42784052 polypeptide=Potri.012G060600.2.p locus=Potri.012G060600 ID=Potri.012G060600.2.v4.1 annot-version=v4.1 ATGATTCAGAGATTTGTTGACGCCGTCCTAGCTGTTACCAAGGAGTCGGTGAAGACGGTGACGTATGAGTCGTTGAACAATATTGCGAGGTTGATAAATG GAGTGTCTGCGATTTTGTTGACTATTTTGCCTGCAAAGGCTAATGTTCTTGAAGGTCTTCAAGGATGGGAGCTCAGGCCTACTTTTCGTGGGCCTCGATT ACCCCGCTGGATGGAGAATGGCGTGTCCTCTTTCAACAAATTCATTCATGAGCTACCCATGGATTCTGATACTTCAAGCATGGATTATTCATCAACAGAG GAAGATGGTGATGGAATGTATCCTCCAACACCATCATCTCAATGCTCACGCATGTCGCGTGCAAGTACTTTCAGCAGGAATCGTGGGCATTCTACCGGGT GGACCATCTTCTTATTTTCATGGATTCTGTTTCCCTTAAGGTTTCTGCTGGGAATTCCTATCCGTTTCTTTCGTTTATTTTACATTAGGAGGTCAACAGC CTCTCCTAGAGGAAGCCACCAGAATTCACCATTACACACCTTTAAGAAAATTCATTCGTTAAGGGACCATGTCATTCACCGCACCACTGACAGGAGACGG GGAGTCATTGAGGACCTTCATCTTGCAATCGAGGTTTTCATAGAAGTTATATTTGATTTTTTTCATAAAGCAGCACATTTTCTTCTTTCGCCATCAGAAG TTCTTAAAGCAATCTGTAGATGGTTTCTGTCTTGGACAAGTGGCAACGAAGATATCCATGGTGGTGTTTCAGATACATCTATACCTGCTGCTACACTTGG AGAGGATGATCCAGCTCCTACAGAGACGAAAACTACTTTGCACAACTCTTTGAATACAGATGCTCGAACCTGCCAAGATGTTATAACTGAGCTTGGATAC CCTTATGAAGCTATTCATGTGATCACTTCAGATGGATATGTTCTGCTTCTGGAAAGAATTCCTAGACGTGATTCTCGAAAAGCTGTTTACCTCCAACATG GGATATTGGATTCATCTATGGGTTGGGTGTCCAATGGGGTTGTTGGAAGTCCAGCTTTCGCAGCATATGATCAAGGATATGATGTTTTCCTTGGGAACTT ACGTGGTTTGGTTTCTAGAGAGCATATTGAAAAGGAAATTTCCTCACAGAAGTATTGGCGGTATTCCATCAATGAGCATGGGACAGAGGACATTCCAGCA ATGATTGAGAAGATTCACCAGGTTAAAAGTGCTGAATTGAAAATTAGCCAGCCTGATCTTGAGGAAGAAACAAATGATGATCAACATTATAAACTTTGTG CAATCTCCCATAGCTTGGGAGGAGCTGCCATGTTGATGTATGTTATAACAAGCCGGATTGAAGAGAAGTCCCATAGACTATCTCGATTGATTTTGATGTC GCCTGCTGGCTTCCATCATGATTCCTCCTTAGTCTTTACAGCTTTTGAGTATATGTTCCTTCCTTTGGCTCCTATTCTGGCATGTTTCGTTCCTGCCTTT TACATACCAACAAGATTCTTCCGCATGTTGCTAAACAAATTGGCTCGGGACTTCCATAACTACCCAGCAGTTGGAGGGGTGGTTCAAACCCTTATGAGTT ATGTTGTTGGCGGAGACAGCTCAAATTGGGTGGGTGTAATAGGGTTACCACACTATAACATGAATGACATGCCAGGAGTTTCCTTTTATGTGGCTCACCA CCTTGCACAAATGAAACGTGCAAGGAGATTTAGAATGTATGATTATGGAAGTGCATCTGCCAACATGGATGCGTATGGATTTCCAGAACCATTGGACTTG GGTGAAAATTATGGGTTCATTGATATTCCAGTTGATTTGGTTGCTGGAAAAAAGGACAACGTGATTCGGCCTTCAATGGTAAGAAAGCATTATAAGTTGA TGAAGGAAGCCTGTGTGGAAGTATCATATACTGAATTTGAATATGCTCACTTGGATTTCACCTTCTCCCACCACGAAGAGCTGTTAGCCTATGTGATGTC ACGTTTGCTGCTTGTTGAACCAGCTCAGAAGCAGCTACGAAATGAGAAATCTTTACGGCTGAAGAGAAAAGGACAAACAAAATTTTAA
AA sequence Show only first row Show all	>Potri.012G060600.2 pacid=42784052 polypeptide=Potri.012G060600.2.p locus=Potri.012G060600 ID=Potri.012G060600.2.v4.1 annot-version=v4.1 MIQRFVDAVLAVTKESVKTVTYESLNNIARLINGVSAILLTILPAKANVLEGLQGWELRPTFRGPRLPRWMENGVSSFNKFIHELPMDSDTSSMDYSSTE EDGDGMYPPTPSSQCSRMSRASTFSRNRGHSTGWTIFLFSWILFPLRFLLGIPIRFFRLFYIRRSTASPRGSHQNSPLHTFKKIHSLRDHVIHRTTDRRR GVIEDLHLAIEVFIEVIFDFFHKAAHFLLSPSEVLKAICRWFLSWTSGNEDIHGGVSDTSIPAATLGEDDPAPTETKTTLHNSLNTDARTCQDVITELGY PYEAIHVITSDGYVLLLERIPRRDSRKAVYLQHGILDSSMGWVSNGVVGSPAFAAYDQGYDVFLGNLRGLVSREHIEKEISSQKYWRYSINEHGTEDIPA MIEKIHQVKSAELKISQPDLEEETNDDQHYKLCAISHSLGGAAMLMYVITSRIEEKSHRLSRLILMSPAGFHHDSSLVFTAFEYMFLPLAPILACFVPAF YIPTRFFRMLLNKLARDFHNYPAVGGVVQTLMSYVVGGDSSNWVGVIGLPHYNMNDMPGVSFYVAHHLAQMKRARRFRMYDYGSASANMDAYGFPEPLDL GENYGFIDIPVDLVAGKKDNVIRPSMVRKHYKLMKEACVEVSYTEFEYAHLDFTFSHHEELLAYVMSRLLLVEPAQKQLRNEKSLRLKRKGQTKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73920			alpha/beta-Hydrolases superfam...		Potri.012G060600 [exp]	0	1
AT5G26720			unknown protein		Potri.013G000200 [exp]	12.40	0.6248
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.012G078900 [exp]	15.39	0.6454
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	19.62	0.6272	ACX1.1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.005G045100 [exp]	25.39	0.6338	NHX2.1
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Potri.016G089500 [exp]	32.86	0.5648	Pt-PIP2.2
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.008G065600 [exp]	37.22	0.6132	MDPIP1.3
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	43.54	0.6156
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.016G055300 [exp]	48.96	0.5916
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	66.24	0.5310
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	73.60	0.5921

Compare expression of checked genes

Potri.012G060600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.