Plant FIBer expression Database

Potri.012G060751 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G060751.1 pacid=42783900 polypeptide=Potri.012G060751.1.p locus=Potri.012G060751 ID=Potri.012G060751.1.v4.1 annot-version=v4.1
ATGAAAAAGCTGGGAAGAAGAGCAGTAAAAACATGGTTGCTTATCATCGTTGAAAATGGTGGACAAACTAGCCTCCCCAGAGAGCATGGAAACACCGCAA
TCCATCTCTCCAGAGAGTTTTTTTTATTGCATTGTCTCCTCCAATCTTGCATAAGCCACCACTCTCCCTGCAGATCTACAAACCCATCAATTTTTGGTAG
CAAAAGGTTGGAGAATCTGGTTGAGCAATCACCGTTCCAGACCCACCCTGCAGATCTGTTTTCTTCTTATTTCTTCGATTCACTCTTTATGGAGGGTTTT
TCAAATAGAACTTCACCTTTCTTTGACAATTTGAAAGGGTCCCTTTTACGTTCACATTCTATTGAGATGGCATCTGCCATTACAGAAAAGGGTTTTCTGA
TGTTCATTGCAGTTAAACTTTCCCTAGTTAGAAATATATCTGTTGTTTCTTCTTTGTCAAATTCGATCGATAGAGAGTTATTTGTTAGTTTTAATCCCTA
TGCCAATATGTATGAATATTCTATTGTTCCAAATTTGTTCAAATTCGATCGATAG
AA sequence
>Potri.012G060751.1 pacid=42783900 polypeptide=Potri.012G060751.1.p locus=Potri.012G060751 ID=Potri.012G060751.1.v4.1 annot-version=v4.1
MKKLGRRAVKTWLLIIVENGGQTSLPREHGNTAIHLSREFFLLHCLLQSCISHHSPCRSTNPSIFGSKRLENLVEQSPFQTHPADLFSSYFFDSLFMEGF
SNRTSPFFDNLKGSLLRSHSIEMASAITEKGFLMFIAVKLSLVRNISVVSSLSNSIDRELFVSFNPYANMYEYSIVPNLFKFDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G060751
[exp]
0 1
AT5G22300 AtNIT4, NIT4 nitrilase 4 (.1) Potri.006G207700
[exp]
1.41 0.8892
AT2G16250 Leucine-rich repeat protein ki... Potri.014G196600
[exp]
3.46 0.8482
AT2G15730 P-loop containing nucleoside t... Potri.009G105200
[exp]
6.63 0.8684
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.018G054100
[exp]
9.48 0.8647 ATKEA4.2
AT3G66658 ALDH22A1 aldehyde dehydrogenase 22A1 (.... Potri.008G106000
[exp]
10.48 0.8768 ALDH22.1
AT3G07330 ATCSLC6, ATCSLC... CELLULOSE-SYNTHASE LIKE C6, Ce... Potri.014G190701
[exp]
11.22 0.8703
AT5G51290 Diacylglycerol kinase family p... Potri.004G233300
[exp]
14.14 0.8565
AT4G19020 CMT2 chromomethylase 2 (.1) Potri.003G100000
[exp]
22.58 0.8439
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Potri.008G178951
[exp]
22.80 0.8276
AT2G26590 RPN13 regulatory particle non-ATPase... Potri.003G027520
[exp]
24.97 0.8118

Potri.012G060751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.