Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SCD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49040 1782 / 0 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT3G49660 87 / 3e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 84 / 4e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 82 / 3e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 83 / 5e-16 PRL1 pleiotropic regulatory locus 1 (.1) AT3G18860 83 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2) AT5G08390 82 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 81 / 4e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 79 / 2e-14 Coatomer, alpha subunit (.1) AT1G11160 79 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049500 [exp] 2218 / 0 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.010G255400 [exp] 92 / 1e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 87 / 4e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 88 / 1e-17 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 84 / 3e-17 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 87 / 7e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G150700 [exp] 86 / 1e-16 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 81 / 4e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 80 / 1e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040449 [exp] 1951 / 0 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 1882 / 0 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10041007 [exp] 91 / 3e-18 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10002090 [exp] 87 / 3e-18 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 86 / 8e-18 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 89 / 2e-17 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10014674 [exp] 84 / 8e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 83 / 1e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 83 / 1e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 82 / 1e-15 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0330 [poplar] [flax] AVL9 PF02141 [poplar] [flax] DENN DENN (AEX-3) domain CL0431 [poplar] [flax] PF PF03456 [poplar] [flax] uDENN uDENN domain
Representative CDS sequence Show only first row Show all	>Potri.012G060800.2 pacid=42782994 polypeptide=Potri.012G060800.2.p locus=Potri.012G060800 ID=Potri.012G060800.2.v4.1 annot-version=v4.1 ATGGGAAGGCTGTTCGAGTATTTCGTAGTGTGTGGGTTGGGTCCGGAGATGAGAACGGTGGATAGAAACAAAGGATATCATGGAATGCGAGTGTTTTATC AATCTTCTTTACTCGATCAATATCCTCCTGATAATCACTCTCTTTATCCTCCGCCTCCTCCTCAGCTCCCAATTTGTGTCCTTCCTGCTGGTGTTCAGTT TTACCCCTCGGGATTCGATGCTGATGATTCCTCCACATTTCCAAGAAGTTACCCCATTGTTTTGACCGAGGGTGATGGATCAAAAATTTATGTTAGTTGC ATTGCCTTCCGGGATCCAGTTAGCGAGGATATTGCTGAAGCTTACCGCATTCCTGCAAACTCTTTTGCTGACAAATGCATCTGCCTTGTTTCCCGATCCC CTAGTTTTGGTGTTCTTAGAAATGCACTGGAAGAGTTATTTGCACTTTGCTTTTCCCCTGCTGGAAGTAGCAAGCCATTATGGGAAGTTATATCTCACAT GATCTCGAATGTCCCTTTGCCTACTCCTGGAAAGGATCGGGTCTTGTTTGCCATTGAGAACTGCCTGCTTTCATTGGAAGCTCCACCAAAAGATGGACTC CCCCATGTTGATATATCATTTCAGCCATTGGTACAGTGTTTGGATGTGGACAACTTACTCAAACTTTTTACTGCCGTGTTACTTGAAAGGAGGATTTTAC TTCGTTCCAACAAGTATTCACTTTTAACCATAGCATCAGAGGCCATATGTCATTTGATTTATCCCTTTAGGTGGCAGCATGTCTACATTCCATTGCTATT TTTCAGTGGAGTAGACTATATTGATGCGCCAACACCATATATGATGGGTCTTCATTCATCTGTTGATACGTCTGACCTTGCAATGGATGGTGTAGTCGTT GTGGACCTTGAGTATAACCGAATTAGCACCTCAGAGGAAATACCCCCTATTCCAGAGCCAGAATTAAGTTCTTTGCGGAGTGAGATACTGAAGCTATTGT ACCCTAATGTCATGGGAATAGATCAGATGAAAGCTGGTTTGGTTAACTCATCTGAGCAATATTTAAAGGGCTGCAACAAGCCTTGGGGAGAAGATCATGA CGTTCAACTTAGGTTAATATTCCTAAAGTTCTTTGCATCCATTTTAGGTGGATACCGGAATTTCCTTGAAAACACTGTGACTCATGCCTTCAACGCCCAA GCATTTTTGAAGAAACGCTCTAGGTCAACCAACCAACCACCGGATCCCATGATAACACAGTTCTTAGATTCCCATGGTTTCTTGGATTATCTGGAGAGAG GTATTGATTCTGATGGAAACAATAATAATCTTCTTGAGAAGTTACAAGACACAATTGGAAGGGGTCAGAATCCTATTTCAATTCTTTCCACTTCGGTGGT AGAACCTGAGATTATAACCATATCAGATCCAGATGTCGGAATATTGGGATCAGGTGCTAAATATACTTATGACAGGTTTCCTTCAAACATCAGGTCAGAA GAACAAGAGGAGAAGAGGAAACAAATTCTTGCAGCAGCAAGTGGAGCTTTTGAATACATTAAGCATGCTCCTAGTTCGCCATCTGTGCAAGTGGGCAAGG ACTCTCTTAGTCCCATGGAAAGGGCTGCAGAAAGGGAGCTTATGGTTTTGGACATTAAAGTTAAGCTGCAGGGATTGTGGCTTCGTCTTCTCAAACTGGG AGCTACTGACGACCCACTTTCATCATTTGAATATGGCACTATCCTTGCATTGATTGAGTCTGACGCGGAGGGGATTGGTGGTAGTGGGTTTGTTGAATGT ATAAGGGAGCATATACACTCAGGATGGCATTGTCAATTGACCGATGAACAGTTTATTGCGGTGAAAGAACTGCTTAAAACAGCAATTAGTCGTGCAACAT CCCGGAATGATGTGTCAACCATTAGAGACGCCCTTGAAGTATCTGCTGAGATGTATAAAAAAGATTCTAATAATGTTTCTGACTATGTCCAGCGTCATCT TATTTCTCTGTCTATATGGGAGGAGCTACGGTTTTGGGAGGTGTTCTTTGAGTATCTAATGGAGCATTCTTCAAGCAAGTCAGCCAATTATGCAGCTTTA GTGACAACACAGTTAATTCTGGTGGCTTTACACATGGCTGGATTGGGACTTCCTGATACTGATGCTTGGCACATGATTGAAACAATAGCAGAGAAGAACA ATATTGGATACAAACAGTTTATAAAACTGAGAGGATTCTTGTCACATATCCAGCAAATTCGTATCAGTTACTGGGGAATATCTTCTTTAAAGGCCCAATC AATGTTGTGTCATGGATTGTCATCTCCACACCCAAAAGATTCTATGGATGAGAATCAGCAACCTGCAGAAGCTTCTGTTATTGGCAGGAGCTGGGTCCAA AGCATGTTTAGCAGAGATTCATCCAGAGCAAACTCTTTTGGTCAAGTTCGTAAAGGGTCTTCCAATGGCACTTCAGTAAATGAAAATGGAACCCCAAGAA AACAAGATTCGTCTGCTGATGGGCAGAAGAAACTTCAAACCAATGTTCGCATACTTAGAGGCCATAGTGGTGCCGTTACTGCTGTACATTGTGTAACCAG AAGAGAGGTGTGGGATCTGGTTGGTGACCGTGAAGATGCTGGTTTCTTTATCAGTGGAAGCACAGACTGCATGGTTAAAATCTGGGATCCTAGCATTCGT GGTTCTGAACTCCGTGCAACTTTGAAAGGGCATACCAGAACTGTTCGTTCTATAAGTTCTGATCGAGGAAAAGTGGTGTCAGGATCTGATGATCAGTCTG TTATTGTATGGGATAAGCAAACATCGCAGCTTCTTGAAGAGCTGAAGGGTCATGATGCCCAGGTTAGCTCTGTCCGTATGCTGTCTGGTGAACGTGTCCT TACTGCTGCACATGATGGAACTGTTAAGATGTGGGATGTTCGAACTGATACTTGTGTGGCAACAGTTGGCCGTTGCTCTAGTGCAGTCCTATGCATGGAG TATGATGATTCCACTGGAATTCTTGCTGCTGCTGGTAGAGATGCGGTTGCAAACATATGGGATATCCGTGCTGGTAGGCAGATGCACAAGCTTTTAGGCC ACACAAAATGGATTCGGTCAATTAGAATGGTTGGAGACACACTGATTACTAGTAGTGATGATTGGACTGCCAGAGTGTGGTCTGTTTCACGAGGAACATG CGATGCTGTTCTAGCCTGCCATGCTGGTCCAATATTATGCGTTGAATATTCCATGTCAGACAGAGGAATAATAACAGGTTCAACTGATGGACTTCTCCGG TTTTGGGAAAATGAGGAGGGAGGCATAAGATGCGTGAAGAATGTTACCATTCATTCAGCTCCTATATTATCCATCAATGCTGGGGAACACTGGTTGGGAA TTGGCGCAGCTGACAATTCTATGTCTCTCTTTCACCGGCCTCAAGATAGACTTGGCAGCTTCTCTAGCACAGGATCAAAAATGGCTGGGTGGCATCTTTA CAGGACACCGCAAAGGACAGTTGCTATGGTTAGATGTGTGGCTTCTGATCTCGAAAGGAAAAGGATATGCAGTGGTGGTCGTAATGGAGTTCTTAGGTTA TGGGAGGCGACCATCAATATTTAA
AA sequence Show only first row Show all	>Potri.012G060800.2 pacid=42782994 polypeptide=Potri.012G060800.2.p locus=Potri.012G060800 ID=Potri.012G060800.2.v4.1 annot-version=v4.1 MGRLFEYFVVCGLGPEMRTVDRNKGYHGMRVFYQSSLLDQYPPDNHSLYPPPPPQLPICVLPAGVQFYPSGFDADDSSTFPRSYPIVLTEGDGSKIYVSC IAFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFGVLRNALEELFALCFSPAGSSKPLWEVISHMISNVPLPTPGKDRVLFAIENCLLSLEAPPKDGL PHVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSSVDTSDLAMDGVVV VDLEYNRISTSEEIPPIPEPELSSLRSEILKLLYPNVMGIDQMKAGLVNSSEQYLKGCNKPWGEDHDVQLRLIFLKFFASILGGYRNFLENTVTHAFNAQ AFLKKRSRSTNQPPDPMITQFLDSHGFLDYLERGIDSDGNNNNLLEKLQDTIGRGQNPISILSTSVVEPEIITISDPDVGILGSGAKYTYDRFPSNIRSE EQEEKRKQILAAASGAFEYIKHAPSSPSVQVGKDSLSPMERAAERELMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVEC IREHIHSGWHCQLTDEQFIAVKELLKTAISRATSRNDVSTIRDALEVSAEMYKKDSNNVSDYVQRHLISLSIWEELRFWEVFFEYLMEHSSSKSANYAAL VTTQLILVALHMAGLGLPDTDAWHMIETIAEKNNIGYKQFIKLRGFLSHIQQIRISYWGISSLKAQSMLCHGLSSPHPKDSMDENQQPAEASVIGRSWVQ SMFSRDSSRANSFGQVRKGSSNGTSVNENGTPRKQDSSADGQKKLQTNVRILRGHSGAVTAVHCVTRREVWDLVGDREDAGFFISGSTDCMVKIWDPSIR GSELRATLKGHTRTVRSISSDRGKVVSGSDDQSVIVWDKQTSQLLEELKGHDAQVSSVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCME YDDSTGILAAAGRDAVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTLITSSDDWTARVWSVSRGTCDAVLACHAGPILCVEYSMSDRGIITGSTDGLLR FWENEEGGIRCVKNVTIHSAPILSINAGEHWLGIGAADNSMSLFHRPQDRLGSFSSTGSKMAGWHLYRTPQRTVAMVRCVASDLERKRICSGGRNGVLRL WEATINI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	0	1	SCD1.2
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	2.82	0.8864
AT3G04490			unknown protein		Potri.019G019100 [exp]	3.00	0.8704
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	3.31	0.8956
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	3.46	0.8429
AT5G06120			ARM repeat superfamily protein...		Potri.003G189500 [exp]	5.47	0.8394
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	6.00	0.8522
AT5G15070			Phosphoglycerate mutase-like f...		Potri.004G129900 [exp]	9.16	0.8211
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	10.95	0.8659
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Potri.009G011400 [exp]	11.53	0.8551
AT1G50730			unknown protein		Potri.001G356700 [exp]	12.04	0.8211

Compare expression of checked genes

Potri.012G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.