Plant FIBer expression Database

Potri.012G061000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18480 987 / 0 AtCASP CCAAT-displacement protein alternatively spliced product (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032478
[exp]
811 / 0 AT3G18480 900 / 0.0 CCAAT-displacement protein alternatively spliced product (.1)
Lus10042975
[exp]
757 / 0 AT3G18480 820 / 0.0 CCAAT-displacement protein alternatively spliced product (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08172 CASP_C CASP C terminal
Representative CDS sequence
>Potri.012G061000.2 pacid=42783395 polypeptide=Potri.012G061000.2.p locus=Potri.012G061000 ID=Potri.012G061000.2.v4.1 annot-version=v4.1
ATGGAGGCTCCGCAAGGAGGATCCGAGAGGGACAAAACGATCTCCACTTCTCCTGTCTCCCTCGTCTCCAATTTCTGGAAAGACTTTGAGCTGGAGAAGG
AGAAAAGTGTGTTGGATGAGCAGGGGCTTAGAATTGCTGAAAATCAGGAAAACAGCCAGAAAAACCGACGGAAGCTTGCCGAGAGCACCAGAGATTTCAA
GAAGGCTTCATCCGACGAAAAGTTAGGTTTGTTTAACTCATTGCTAAAAGGGTTCCAGGAAGAAGTCGATAATCTTACTAAGAGAGCCAAATTTGGAGAA
AATGCTTTTCTTAATATCTATCAGAAACTTTATGAGGCCCCAGATCCTTATCCTGCTCTTGCTTCAATTTCTGAGCAAGATCTGAAATTGTCCGAGTTAG
AGTCTGAGAGCCGGAAGATGAAAGTTGAGCTAGAGGAGTTCAGGACTGAGGCAGCTCACCTAAAGAATCAGCAAGCAACAATAAGAAGACTTGAAGAGCG
CAACCGTCAGTTAGAGCAGCAGATGGAGGAAAAAGTAAAGGAAATTGTGGAGATGAAGCAACGTAGTTTGGCTGAAGAGAACCAGAAAACATTAGAGGTT
TTAAAAGAAAGGGAGCAATCATTGCAAGATCAATTACGACAAGCTAAAGACAGCGTTGCAACTATACAGAAATTACATGAACTTGCACAAAGCCAATTGT
TTGAAGTTCGTGCTCAATCAGAGGAAGAATGGGCAGCAAAGCAATCAGAGGTCAATTTTCTGATGGATGAAGTGGAAAGGGCACAAACACGTCTGCATAG
TCTTGAGAGGGAGAAAGGTGTCCTACGCTCTCAGTTGCAGTCAGCAAATGAAGAGATTGAAGATAAGAAAGGTGACAATTCAGATTCAACTAGCATTCTC
GAGAGTTCTTTGAGCACCAAAGAAAAGCTTATCTCTGAACTTAACATGGAACTTCACAACATTGAAACCACATTGACAAATGAGCGAGAACAACACATTA
ATGAGATCAAAAAATTGAATATTTTACTTAACGAGAAGGAAGCTGCTCTCGAGGAGATGAAGAAAGAGCTTCAAGCAAAACCAACTGAAAAATTAGTTGA
TGATTTGCGTAAAAAAGTGAAAATTTTGCAGGCTGTAGGTTACAATTCAATTGAGGCTGAGGATTGGGAAGTAGCTACAAGTGGGGAAGAGATGAGCAAA
ATGGAGTCTCTTCTTCTTGATAAAAACAGAAAAATGGAACATGAACTCACGCAGTTGAAGGTAAAAATCTCTGAGAAAGCGACTTCACTGGAAACAGCTG
AAGGCAAGATAACAGAGCTTACTGCAAAGGTTAATGAACAACAAAAATTAATACAAAAGTTGGAAGATGATATATTAAAGGGTTATAGCTCCAAAGATCG
GAAAGGCAGTCTATTTGATGCTTGGGATCTTTCGGAAGCAGGGGGGGTTGAGTTATCTGAGAATGCAGATCAGAAACATGTTTCCGTAGATCAAGATCAA
AGCTCAATGCTTAAGGTGATCTGCAATCAGCGAGATCGATTTAGGGCACGTTTGCGGGAGACCGAAGAGGAGGTGAGGCAATTGAAGGAGAAGATAGGGG
TGCTAGCAGCAGACTTGGAGAAAACAAAAGCTGATAATGTCAAACTATATGGAAAGATACGCTATGTCCAAGATTACAATCTTGAGAAAGTAGTTTCTCG
AGGATCAAAGAAGCATGCTGAGGATCTGGAAAGTGGCTTTGCCTCAGATGTTGAATCTAAGTACAAGAAGATATATGAAGATGACATAAATCCGTTCGCT
GCTTTTTCAAAGAAGGAGCGGGATCAAAGATACAAGGAGTTGGGTTTCAGGGATAGAATCACGCTTAGTAGTGGACGCTTTCTTCTGGGTAACAAATATG
CTCGAACTTTTGCATTTTTCTATACAATTGGGTTACATATTCTGGTGTTCACCTGTCTCTATCGAATGTCAGCTCTGAGCTATCTCAGCCACGGTGAGGC
CTTCGATGGAGATAAAAAGCTGGACCTCCCACATGCACTCTAG
AA sequence
>Potri.012G061000.2 pacid=42783395 polypeptide=Potri.012G061000.2.p locus=Potri.012G061000 ID=Potri.012G061000.2.v4.1 annot-version=v4.1
MEAPQGGSERDKTISTSPVSLVSNFWKDFELEKEKSVLDEQGLRIAENQENSQKNRRKLAESTRDFKKASSDEKLGLFNSLLKGFQEEVDNLTKRAKFGE
NAFLNIYQKLYEAPDPYPALASISEQDLKLSELESESRKMKVELEEFRTEAAHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEV
LKEREQSLQDQLRQAKDSVATIQKLHELAQSQLFEVRAQSEEEWAAKQSEVNFLMDEVERAQTRLHSLEREKGVLRSQLQSANEEIEDKKGDNSDSTSIL
ESSLSTKEKLISELNMELHNIETTLTNEREQHINEIKKLNILLNEKEAALEEMKKELQAKPTEKLVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSK
MESLLLDKNRKMEHELTQLKVKISEKATSLETAEGKITELTAKVNEQQKLIQKLEDDILKGYSSKDRKGSLFDAWDLSEAGGVELSENADQKHVSVDQDQ
SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLAADLEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHAEDLESGFASDVESKYKKIYEDDINPFA
AFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSYLSHGEAFDGDKKLDLPHAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18480 AtCASP CCAAT-displacement protein alt... Potri.012G061000
[exp]
0 1
AT5G16730 Plant protein of unknown funct... Potri.013G079000
[exp]
1.41 0.9376
AT2G46700 ATCRK3 CDPK-related kinase 3 (.1.2) Potri.014G103500
[exp]
2.64 0.9256
AT2G38580 Mitochondrial ATP synthase D c... Potri.016G139000
[exp]
4.47 0.9138
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Potri.002G222400
[exp]
4.79 0.9396
AT1G01510 AN ANGUSTIFOLIA, NAD(P)-binding R... Potri.002G163200
[exp]
7.28 0.8938 AN.1
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Potri.011G088100
[exp]
9.79 0.9355
AT3G09880 ATB' BETA, ATB'... Protein phosphatase 2A regulat... Potri.006G122300
[exp]
11.87 0.8970
AT1G51590 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-ma... Potri.008G007500
[exp]
12.00 0.9123 Pt-MAN1.1
AT3G27470 Protein of unknown function (D... Potri.017G065200
[exp]
13.03 0.9271
AT2G30050 transducin family protein / WD... Potri.008G141300
[exp]
13.56 0.9282

Potri.012G061000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.