Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARP901,ARP4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18450 705 / 0 ATARP4 actin-related protein 4 (.1) AT3G53750 280 / 7e-91 ACT3 actin 3 (.1) AT2G37620 280 / 7e-91 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G09810 279 / 2e-90 ACT2/7, ACT7 actin 7 (.1) AT3G12110 278 / 5e-90 ACT11 actin-11 (.1) AT5G59370 277 / 1e-89 ACT4 actin 4 (.1.2) AT3G46520 277 / 1e-89 ACT12 actin-12 (.1) AT1G49240 276 / 2e-89 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 276 / 2e-89 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT2G42100 267 / 7e-86 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053100 [exp] 776 / 0 AT1G18450 682 / 0.0 actin-related protein 4 (.1) Potri.010G204300 [exp] 276 / 2e-89 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 276 / 3e-89 AT3G12110 765 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 275 / 6e-89 AT5G09810 769 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 275 / 1e-88 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 274 / 1e-88 AT5G09810 774 / 0.0 actin 7 (.1) Potri.016G045500 [exp] 274 / 1e-88 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 274 / 1e-88 AT3G12110 767 / 0.0 actin-11 (.1) Potri.011G148000 [exp] 273 / 2e-88 AT5G09810 731 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032484 [exp] 755 / 0 AT1G18450 690 / 0.0 actin-related protein 4 (.1) Lus10042980 [exp] 633 / 0 AT1G18450 578 / 0.0 actin-related protein 4 (.1) Lus10005819 [exp] 278 / 3e-90 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 278 / 3e-90 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 278 / 3e-90 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 278 / 7e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 278 / 7e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 278 / 7e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 278 / 8e-90 AT3G46520 768 / 0.0 actin-12 (.1) Lus10016259 [exp] 277 / 1e-89 AT3G46520 767 / 0.0 actin-12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.012G061300.1 pacid=42784030 polypeptide=Potri.012G061300.1.p locus=Potri.012G061300 ID=Potri.012G061300.1.v4.1 annot-version=v4.1 ATGTACGGTGGTGATGAAGTGTCAGCTATAGTCATTGACTTGGGTTCTCACACTTGCAAAGCTGGTTATGCCGGCGAGGACGCACCCAAGGCCGTCTTTC CTTCTGTTGTGGGATCAATTGATCAAATGGATGTTGATGACATGACAAGCAACGAGAAGAATGCTGCTGTAGATTCTAAAAATAATGTCAAAGATTCTGA GAAAGGGAAGGGAAAACGTAAATTATTTGTAGGATCTCAGGCCTTAGGGTTTCGTCGGGACCATATGGAGGTGTTATCCCCTTTTAAGGATGGGATTGTT GCTGACTGGGATATTGTGGATAGCATATGGGATCATGCTTTCAGGGAGTGTCTATTGATTGATCCAAAGGAGCATCCAATGCTACTTGCAGAACCTTCAT CCAACAGTCAACAACAGAGAGAAAGGACAGCAGAGCTTATGTTTGAAAAGTACACTACTCCTGCATTATTTTTGGCGAAGAATGCTGTTTTAACATCTTT TGCATCAGGACGTGCTACCTCGCTAGTTGTTGATAGTGGTGGAGGATCAACTACAATTGCGCCAGTCCATGATGGTTATGTTATTCAAAAGGCTGTGGCC TTTTCTCCTATTGGGGGAGAACTTCTTACTGATTGCTTGATGAAAAGCTTGGAGAGCAAAGGTGTCATGATAAAACCAAGGTACTCTTTCAAAAGAAAGG AAATACAGCCGGGCGTGTTTCAGAGTGTGGATCTTGATTTTACAAATACAACTGACAGCTACAGACTCTACTCTCAGAGAATGATTGCAAGTGATATCAA GGAATGTGTGTGTCGTGCACCGGATACGCCCTATGATGAAAGTTCATACTCAAACATTCCAATGACTCCATATGAGCTTCCGGATGGCCAGACAATTGAA ATTGGAGCTGATAGATTCAAGATTCCAGATATTCTATTCAATCCATCCTTGGTCCAGACAATTCCTGGTATGGATAATTTTGTGGAGATTGCTCCTAGTG TTCGCGGTTTGCCACAAATGGTTATTGAAAGCATTAATAAGTGTGATGTTGATATTCGAAGAGAACTGTTCAGTAGTATACTGCTTGCTGGTGGAACAGC ATCAATGCAACAGTTGAAGGAACGGCTTGAGAAAGATTTGCTTGAGGAGTCTCCTCAAGCTGCCAGAGTTAAAGTGCTGGCTAGTGGAAATGCAACTGAA AGGAGATTCAGTGTCTGGATAGGAGGGAGTATATTGGCATCTCTTGGTTCATTCCAGCAGATGTGGTTCTCCAAGGCCGAGTATGAAGAGCATGGGGCGT CTTATGTACAGAGAAAATGCCCTTGA
AA sequence Show only first row Show all	>Potri.012G061300.1 pacid=42784030 polypeptide=Potri.012G061300.1.p locus=Potri.012G061300 ID=Potri.012G061300.1.v4.1 annot-version=v4.1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMDVDDMTSNEKNAAVDSKNNVKDSEKGKGKRKLFVGSQALGFRRDHMEVLSPFKDGIV ADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYTTPALFLAKNAVLTSFASGRATSLVVDSGGGSTTIAPVHDGYVIQKAVA FSPIGGELLTDCLMKSLESKGVMIKPRYSFKRKEIQPGVFQSVDLDFTNTTDSYRLYSQRMIASDIKECVCRAPDTPYDESSYSNIPMTPYELPDGQTIE IGADRFKIPDILFNPSLVQTIPGMDNFVEIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATE RRFSVWIGGSILASLGSFQQMWFSKAEYEEHGASYVQRKCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	0	1	ARP901,ARP4.2
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	1.73	0.9265
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	4.00	0.9152
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	5.91	0.9009
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	6.48	0.9073
AT1G33350			Pentatricopeptide repeat (PPR)...		Potri.013G089400 [exp]	8.00	0.9005
AT5G11340			Acyl-CoA N-acyltransferases (N...		Potri.006G248900 [exp]	8.24	0.8805
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	8.71	0.9060
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	11.48	0.8753
AT3G58610			ketol-acid reductoisomerase (....		Potri.011G052700 [exp]	11.74	0.8497
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	12.04	0.9058

Compare expression of checked genes

Potri.012G061300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.