Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 362 / 2e-102 dentin sialophosphoprotein-related (.1) AT5G07940 351 / 1e-98 unknown protein AT5G07970 338 / 3e-96 dentin sialophosphoprotein-related (.1) AT3G29385 100 / 2e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056400 [exp] 2604 / 0 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.015G056200 [exp] 952 / 0 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1) Potri.012G066600 [exp] 941 / 0 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021162 [exp] 895 / 0 AT5G07940 270 / 4e-73 unknown protein Lus10040532 [exp] 512 / 2e-155 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1) Lus10021621 [exp] 434 / 1e-127 AT5G07940 265 / 4e-72 unknown protein Lus10034693 [exp] 220 / 3e-58 AT5G07940 126 / 3e-29 unknown protein Lus10040531 [exp] 160 / 1e-44 AT5G07980 109 / 4e-28 dentin sialophosphoprotein-related (.1) Lus10034692 [exp] 93 / 1e-21 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G061400.7 pacid=42782809 polypeptide=Potri.012G061400.7.p locus=Potri.012G061400 ID=Potri.012G061400.7.v4.1 annot-version=v4.1 ATGCCTGGCAACGAAGTTGGAGATAGGATCCACAATTTCCTTGGGCAGGATAACTGGTCGCAGGGCCAGCACCAATCACAGACTGTTGACGGGACTTGGT CTGGCCCAAATAATAATCCCTGGGCTGGAAGTCAGAGGCAGATTGGCACACCTCTTATTTCTAACTTAAAAAATGACAATGTACATCAACCAGCTGATAC TGAGAGAGGAGGTGAATCATCAAGTGTGCAGCTTGGCATGTACTTTTCACATTCAAATCCCAGACCTGAGTTTGCCAGAAGCCAGACTCAAAGCCAACAG CCACCTTTGAATGGCTATATGCATGGCCATCAAGTTCTCCAGACAAACCAGAATGAAGAAAACTTTTTGGGAGTGGATACAGAATCTGATCGACGTAATA TGACATCAAAAGGCTTTTCAATGCTTGATTCACAGCTGGCAGATGGTCCTGAATTTCTCAAAAAGAATTCAGTCAGAATGGATTTTAATGAATCTCCAGT TAATTATGATTTCTTTGGAGGTCAGCAGCAAATTAGCAGTCAGCATCCTGGCATGCTGCAATCTTTTCCTAGACAGCAGCCAGGGATTAGTGACATGCAG CTGCTACAGCATCAATTTATGCTTAAGAAAATACAAGAAATGCAGTGGCAGCAAGAACTTCAGAAGCAAGAAGATGCAAGGAAACTGAATTCAGTCAATC AAGCTTCTGCTTTTGCAAAACAGGCAGCTGGCAACTCACAGCCTTTGATCAACGGCATTCCTATTCATGAAACATCAAATTTTTCATTGCAGCCTGAGCT CATGGCAGCTAGCACAAACTGGCCGCAGCAAGGTGTGCCTCCAGTTATGCAAGGATCTGTTAGAGGACATATGGTTTCCCCTGAGCAGGGCCAGGCACTG CCACACATAGTGGGTATGGTTCCGCAGCAGGTTGATCAATCTCTTTATGGTGTCCCTATCTCTGCAATGAGTCTCACTCCAAGTCAGTATTCTCCTGTCC AAATGGACAAGTCCTTAATGCAGCAGGTATCAGACAGCAGTAACTCCTTAACAAACAATCAGTATGCATTTCCAGAGCAGGTTAGCGTGCGGGATGGAGC ATTGATTTCTAGACGGGGATATCAGGGGAAAATGATTGCATCGTCTGATGGTCATGGTATAAATAGTGGATTTAAGTTGGAAAACTTGCATCAAGTGAAT CCCCAGCAAAACAATGAGCCAGTGCAAGAAATTTGCATGAGGCAAGACCTGGCTGGTCCATCAGAAATATCAGAAGAGGAAACCATGATACAGGTTGCTC CTTCCCAGAATGTGGCCACCCTAGATCCAGCCGAGGCAAAGATTTTGTTTGGGTCCGATGATAATTTATGGGACGCATTTGGCAGGACCACCAACATGGG TTCTGGAGGTTACAATATGTTGGATGGCACAGACTTTTTCAGTACATTGCCCTCTGTGCAAAGTGGGAGTTGGAGTGCTCTTATGCAATCTGCTGTAGCA GAAACTTCTAGCAGTGATACACGGCTACAAGAAGAGTGGAGTGGTGTGACTTACCGAAAGAGAGAACCTCCAGCTGTGAATCAGCACACTCCCACTGCAA ATGATATTAGTAAACAGAAGTCAAATTGGGCTGATAATAGCTTGCCATCTGCCTCTAGCTTGAACACTCGACCCTTCCCTGTGTCTCATGAAACCAATAC AGGTACGAGTTATAATAATATTCGAGGGGTTCACCAATCTGGAGTCAATACTTCACATGAACAGAGTGAGAGGTTGCGGACTGCTTCTCTTAGGCATACT CAGCAGTTTCCGGGGGACGAAACCAAGTGGCCAGATAGGAGACTCCTACAAAAAGCAGCTGCCGAAGGCAGTCATTTTTATGGAAAAGCTACCCATTCTT CAGATGCAGCATCAAATGCAAAGAGCATTCCAGGCTCTTGGGCAAATCAACAGAGCATGCCATCATATAGCTCCAGTGGCCAACCATTAACTAGTCGAAG TGGCTTGAACTTTATGGATTCTGCGTCTCCCATCACAACTGCTGCTTCGAAATATCAGGAAAATGAAAAATCATTCCATGATTCTCAGAATGCTGATAAA AAGAGTCCCATGTTTGAGGTGATGGGTCATGGTGCTGATATATGGAAGACTACTTCTGTTTCCAATTCTACTGCTGAATTGGAACATGCAAAATCTTCCA TGACAAGCCCACTGGTCAACCAAGAAGATACTAACAGGAATAATGTTGCTGCATTGCCAGATTCAAGCACTGAGAGGGCCAACATGGAAAGCAGCAAACA GCTTTCTAAAAGTAATAATATTGATATCTGGAAACATTCTGGTTTTTCAGTGAACCATAAAGGAAATGAGGTTGTAGGAAAGTGCCAACCCCATATGGTC AAGAATGATCATTCTTTTGAGTCATCGAGAAATAGTAGTTTGGCAAACAGGGCAGTTGAAACTCAGGAAGCGCAGCGCTCAAATACAAAAGATAACACAA CTGATAGCTTCCCCAGTATAACCGACCATGCTTCTGCTTTTGGCGCAAGGGAAAACACATGGTTGGGTGCAAGCGATTCTTGTTCTTTGTCCAGAGGAAA GCAAAAGTCATCCAGTCCTATAGGTCGAAAGCCATCTGGATCACGCAAATTTCAGTATCATCCTATGGGGGATCTGGATGCTGACATGGAACCTTCTTAT GGAGCAAATCTCGAGGCAAATTCACAGTCTATTCCTCAGCAGGTTTGTCAAGGGCTAAAGGGTCTTGACCAAGGGTATGGTAGTTATCCAAACTTTCCTA GTCATGCAGCTAGAGATTCTGTTGAAATTGAGAAGGGTCATTTGTCTGGCTTTCAAGGAGAAACAAAAGGCTTAGATGAGATACCTGCAAAAAGTATTCC TCCAGGTTCGGCACCTGGCTTGTCAACTCCCTTTGACAGATCTGTTCGTGCACCAAGTAAAACCATGACAAGCAATCGAAATATGCTGGAGCTCCTTCAC AAGGTGGACCAATTAAGTGAACAGGGAAATGAAATGCACTTCAATTCTAAGATGCCTGAAGCTGAAACTTCTGATGCATCTTTTCATGTTCAGAGGGATC AGTCTCCTGCTTCTCAAGCTTTTGGTTTACAACTGGCTCCTCCATCCCAAAGGGGGCTCATTCCAGAGCATGCCCTTCCTTCTCAGAGCCCCACGAATGC AATTTTTTCTACAAGCACCTCAATGCATTCTGGCAATAGTGCCCAAAGAAATTTTGCTGCTGCCTTTCCCCCTGGTTTCCCTTATTCAAGAAATCATCTT TCCAATCAGCACAAGACTGATACAGGTGGACACACAACAACCAGTAAATGTGTTAATGAATCTTTTGATCAATTTTCTTCTCAACAAAAACAGACAGATG AGTCTTCTGAGAGAGATCAAACTAATCAATCTGCATTACCATCGGTGTCTGACTCATCCAGGCATGCTTCACATAGTGATAATGCCTCTTCTCCTGACCA TGCAAGAGATTCTGCTCAACAATTCTCTGTGCTGGAAGTTGCACCAGCTCCCCAGCGCAATGCTTTATCACAAGATGCTGTTTCTTCAAAAATGTCACCT ACTATGTGGACCAGTGTTCCATCTCAGCTGCATCCATTTGGTTCTCAGCCATTTCAGACTTCATACAGTATGTTTAAATCCAATCTTCTATCACATAACA GTTCAGGCGCAACTTTGACTCTACCACAGAAGCCAGACAATCAAATAATGCAAGTTGGAGGGAGCAGTCAAGCTGAATCTGGTTCCTGTTTGATGAATTC ACATGGTTTTCTTGGGAAAGAGCAACCATCAAAAGGAGACCACTTGCAGCAAGTTTCACCTGAGAATGATCGGGCCCAGAATACAATGAGTGCTTCACAT GAGAAAGGCTCTGTTTTGAATCATCTTACTGAAACATCTCTCCTAGCCAGTACTCGGAAACAAATCGAAGCTTTTGGACGATCTTTAAAACCCAATAATA CTTTGCATCAAAATTACCCCCTACTGCATCAAATGCAGGGCATGGAAAATGAGGAGGTGGATAATGGTAATAGGAGTTTGAAGAGATTTAAAAGTCCTGA TGCTCCCGTGGATCCTCAACTGGTAACTACTCAGGGAGGTCAGCAGTTTTATGGACACAACAACATGGTCAGAGATGCACCGGCAGACTGCACTCCAATT CCCCCTGGAGATTCCAAGATGCTTAGCTTTTCAGCAAAAACAGCTGATGTTCAGGACTCAAATGCACCTTCAAAGGAAATGCTTGCATTTGGTCGACATG ATTCTCAGAGTTTTGCTAGTAGCAATGGTGCAGTTTCTGTCAGAGGTGAACATTCCCAGATTAGTCCCCAGATGGCTCCATCCTGGTTTGATCAGTATGG AACCTTTAAAAATGGACAGATATTACGAATGCATGATGCACAAAGAACTATCTCCATGAATACTTCAGAAATGCCTTTCACTGCTGGAAGACCTGATGAT AGATCGCATGCTCATAGTTCAATTGAGCAAGGAAATGCTGCTGCTGCTGCCAGCCAGTTTGGTATAGTCCAAAAGGGTTCAACCTGCTCATCAATAGCTA GTGAGAAATTTTCTTCCCCTCAGTCTTTGCAGCCTGATTCTGGTGATGTGAGCCTGGTGGTTATGAGACCAAAGAAACGTAAAATTGCCGTGTCCGAACT TGTACCATGGCATAAGGAAGTGATGCATGGTCCTCAACGGCTTCAGAATGTCAGTGCGGTTGAAGTTGACTGGGCACAGGCAACAAATAGATTGACAGAA AAGGTGGAAGATGAAGTTGAAATGGTAGACGATGGACTGCCAGTCCTTAGATCAAAGAGGAGGCTCATATTGACTACACAGCTTATGCAGATACTCCTTC GCCCTGCCCTGGCATCAGTTTTCTCTGCAGATGCTACTTTGCATTATGAGAATGCTGCTTACTTTGTAGCCAGATCAACACTAGGAGATGCTTGCAGCAA ACTCTCTTGTACTGGAAGTGATACTCATGCACCTTCCAACAGCAGAGACCTCCTGCCCGAGAAGATAAAATCACCTGACAAGAGTGTTGATCAATACTTC TCAAAAGTCATGGAAGACCTTATCAGTAGAACAAGGAAGCTGGAGAGTGATTTGTTGAGATTGGACAAAAGAGCATCAGTTTCAGACTTGAGATTGGAAT GCCAAGATCTAGAGAGGTTTTCTGTTATCAATCGTTTTGCAAAATTCCATGGACGGGGTCAAGGTGATGGAGCCGAGAGCTCATCATCCTCAGATGCATC TGGAAATGCCCAGAAATGCCTTCAGAGATATGTCACTGCACTACCCATGCCTAGGAATCTTCCTGACAGGACACAATGTCTTTCACTATGA
AA sequence Show only first row Show all	>Potri.012G061400.7 pacid=42782809 polypeptide=Potri.012G061400.7.p locus=Potri.012G061400 ID=Potri.012G061400.7.v4.1 annot-version=v4.1 MPGNEVGDRIHNFLGQDNWSQGQHQSQTVDGTWSGPNNNPWAGSQRQIGTPLISNLKNDNVHQPADTERGGESSSVQLGMYFSHSNPRPEFARSQTQSQQ PPLNGYMHGHQVLQTNQNEENFLGVDTESDRRNMTSKGFSMLDSQLADGPEFLKKNSVRMDFNESPVNYDFFGGQQQISSQHPGMLQSFPRQQPGISDMQ LLQHQFMLKKIQEMQWQQELQKQEDARKLNSVNQASAFAKQAAGNSQPLINGIPIHETSNFSLQPELMAASTNWPQQGVPPVMQGSVRGHMVSPEQGQAL PHIVGMVPQQVDQSLYGVPISAMSLTPSQYSPVQMDKSLMQQVSDSSNSLTNNQYAFPEQVSVRDGALISRRGYQGKMIASSDGHGINSGFKLENLHQVN PQQNNEPVQEICMRQDLAGPSEISEEETMIQVAPSQNVATLDPAEAKILFGSDDNLWDAFGRTTNMGSGGYNMLDGTDFFSTLPSVQSGSWSALMQSAVA ETSSSDTRLQEEWSGVTYRKREPPAVNQHTPTANDISKQKSNWADNSLPSASSLNTRPFPVSHETNTGTSYNNIRGVHQSGVNTSHEQSERLRTASLRHT QQFPGDETKWPDRRLLQKAAAEGSHFYGKATHSSDAASNAKSIPGSWANQQSMPSYSSSGQPLTSRSGLNFMDSASPITTAASKYQENEKSFHDSQNADK KSPMFEVMGHGADIWKTTSVSNSTAELEHAKSSMTSPLVNQEDTNRNNVAALPDSSTERANMESSKQLSKSNNIDIWKHSGFSVNHKGNEVVGKCQPHMV KNDHSFESSRNSSLANRAVETQEAQRSNTKDNTTDSFPSITDHASAFGARENTWLGASDSCSLSRGKQKSSSPIGRKPSGSRKFQYHPMGDLDADMEPSY GANLEANSQSIPQQVCQGLKGLDQGYGSYPNFPSHAARDSVEIEKGHLSGFQGETKGLDEIPAKSIPPGSAPGLSTPFDRSVRAPSKTMTSNRNMLELLH KVDQLSEQGNEMHFNSKMPEAETSDASFHVQRDQSPASQAFGLQLAPPSQRGLIPEHALPSQSPTNAIFSTSTSMHSGNSAQRNFAAAFPPGFPYSRNHL SNQHKTDTGGHTTTSKCVNESFDQFSSQQKQTDESSERDQTNQSALPSVSDSSRHASHSDNASSPDHARDSAQQFSVLEVAPAPQRNALSQDAVSSKMSP TMWTSVPSQLHPFGSQPFQTSYSMFKSNLLSHNSSGATLTLPQKPDNQIMQVGGSSQAESGSCLMNSHGFLGKEQPSKGDHLQQVSPENDRAQNTMSASH EKGSVLNHLTETSLLASTRKQIEAFGRSLKPNNTLHQNYPLLHQMQGMENEEVDNGNRSLKRFKSPDAPVDPQLVTTQGGQQFYGHNNMVRDAPADCTPI PPGDSKMLSFSAKTADVQDSNAPSKEMLAFGRHDSQSFASSNGAVSVRGEHSQISPQMAPSWFDQYGTFKNGQILRMHDAQRTISMNTSEMPFTAGRPDD RSHAHSSIEQGNAAAAASQFGIVQKGSTCSSIASEKFSSPQSLQPDSGDVSLVVMRPKKRKIAVSELVPWHKEVMHGPQRLQNVSAVEVDWAQATNRLTE KVEDEVEMVDDGLPVLRSKRRLILTTQLMQILLRPALASVFSADATLHYENAAYFVARSTLGDACSKLSCTGSDTHAPSNSRDLLPEKIKSPDKSVDQYF SKVMEDLISRTRKLESDLLRLDKRASVSDLRLECQDLERFSVINRFAKFHGRGQGDGAESSSSSDASGNAQKCLQRYVTALPMPRNLPDRTQCLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G061400 [exp]	0	1
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	1.00	0.9352
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	3.31	0.8679
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	3.74	0.8760
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	3.87	0.8836
AT1G48090			calcium-dependent lipid-bindin...		Potri.008G100600 [exp]	4.47	0.8819
AT1G11950			Transcription factor jumonji (...		Potri.011G009700 [exp]	5.91	0.8800
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	6.32	0.8889
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.002G059800 [exp]	10.00	0.8680
AT2G19390			unknown protein		Potri.006G146600 [exp]	11.61	0.8683
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	13.85	0.8759

Compare expression of checked genes

Potri.012G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.