Plant FIBer expression Database

Potri.012G061700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74220 91 / 1e-20 unknown protein
AT2G03630 64 / 1e-11 unknown protein
AT5G39200 55 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G057200
[exp]
394 / 4e-137 AT1G74220 77 / 9e-16 unknown protein
Potri.010G158000
[exp]
80 / 2e-16 AT2G03630 108 / 7e-27 unknown protein
Potri.008G096300
[exp]
69 / 7e-13 AT2G03630 91 / 2e-20 unknown protein
Potri.017G094300
[exp]
64 / 3e-11 AT5G39200 70 / 3e-14 unknown protein
Potri.004G120400
[exp]
59 / 2e-09 AT5G39200 68 / 1e-13 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021153
[exp]
123 / 1e-30 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10040518
[exp]
78 / 2e-16 AT1G74220 46 / 9e-06 unknown protein
Lus10037082
[exp]
70 / 7e-13 AT2G03630 82 / 2e-17 unknown protein
Lus10036900
[exp]
69 / 1e-12 AT2G03630 82 / 3e-17 unknown protein
Lus10029645
[exp]
64 / 2e-11 AT2G03630 62 / 4e-11 unknown protein
Lus10030710
[exp]
63 / 7e-11 AT5G39200 71 / 3e-14 unknown protein
Lus10013196
[exp]
62 / 1e-10 AT3G02125 67 / 5e-13 unknown protein
Lus10032983
[exp]
60 / 7e-10 AT3G02125 59 / 6e-10 unknown protein
Lus10026665
[exp]
53 / 2e-07 AT2G03630 73 / 2e-14 unknown protein
Lus10004647
[exp]
52 / 2e-07 AT2G03630 62 / 6e-11 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G061700.2 pacid=42784379 polypeptide=Potri.012G061700.2.p locus=Potri.012G061700 ID=Potri.012G061700.2.v4.1 annot-version=v4.1
ATGATGGAAGCTTCAGAGCCTGAAGCAAGACAGATGTTTCCAGTTAAGGAATTTGTACATGGGAGTGAAACTAGTAATGGTTTGAGTATGTATCCTGCCA
CCACTCTCGGTGAAGATGATAATTTTACCAATGGCAGAATGTTAAGCTCCTCGTCCTCCTCGTGCTCTTCTTCATCTGGAGACTCTTTTGAGTTGGATGC
AGATGAAATCAGCAAGTCCCATGCAGGTGATATTGGGGTTCCTAAACATAGCGTAAACGCTCAAGTTCCTTTGGAGGACCATGACAATGACATTCCGTTT
CCTCCAACACAGGTGATGGAGCGAACTGCTGATTCAAATCCCTCTGCCGCTTTTAGGATTCCTTCTTCTGTATTTGCTAGAACTATATCCAATACTCGAA
TGGAATGGAGTGATGCTTCCACTGAGTCATTGTTCAGTATTTATATGGGGAATATGAGCTTCACAAGAGACCACCAAAACTGGTTGGGTAAATCCGGAGA
GCTAGGCTTTCCTGGTGATTCTACGCCGTTGATTGATCACTCAAGCAACCAACCTCCAAGTAATCACCATCCAGTTAATAAATCAACAGAGGTTGGACCA
AAGAAATCAAATGTCAATGAGTACCTTGGTGAAACTGATCAACCAAAAGCTGCTGAAACAATGAGGCGAGTTGTAAAAGAGGACAAAGAAGATGGAAACA
AAGAGAGGTCTCTTGCCAAAGGATCACTTCATTCTGCTAGCCTTTCTCGTCTTTCAGATGCAAGTGGGGCAAGTATCAAATCTTTTGCATTTCCAATTTT
GACAGGGGATGATAAAAGTTATTCACTATCTCATAAGCAATATCCATCATCATCACGGCACCAGTCACAGCCGCAAACTCCTAAAGCAGCTCAATCACCT
CGGGCACAGCTAGAGCCAAAGCTGTTCTCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCATTGCCAAAAGCAAATCTAAATGTGGCTCCGGGTAAATGGT
TCTCCTGTGTTCCGTGTTGCTCGTTCTGTTCTTGA
AA sequence
>Potri.012G061700.2 pacid=42784379 polypeptide=Potri.012G061700.2.p locus=Potri.012G061700 ID=Potri.012G061700.2.v4.1 annot-version=v4.1
MMEASEPEARQMFPVKEFVHGSETSNGLSMYPATTLGEDDNFTNGRMLSSSSSSCSSSSGDSFELDADEISKSHAGDIGVPKHSVNAQVPLEDHDNDIPF
PPTQVMERTADSNPSAAFRIPSSVFARTISNTRMEWSDASTESLFSIYMGNMSFTRDHQNWLGKSGELGFPGDSTPLIDHSSNQPPSNHHPVNKSTEVGP
KKSNVNEYLGETDQPKAAETMRRVVKEDKEDGNKERSLAKGSLHSASLSRLSDASGASIKSFAFPILTGDDKSYSLSHKQYPSSSRHQSQPQTPKAAQSP
RAQLEPKLFSEPEPEPEPEPLPKANLNVAPGKWFSCVPCCSFCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74220 unknown protein Potri.012G061700
[exp]
0 1
AT5G64620 ATC/VIF2, C/VIF... cell wall / vacuolar inhibitor... Potri.011G114700
[exp]
5.47 0.5331
AT4G34770 SAUR-like auxin-responsive pro... Potri.009G127400
[exp]
12.40 0.5569
AT3G15370 ATHEXPALPHA1.24... expansin 12 (.1) Potri.001G401700
[exp]
13.07 0.5704
AT2G28420 GLYI8 glyoxylase I 8, Lactoylglutath... Potri.009G055500
[exp]
16.97 0.5323
AT2G47680 C3HZnF zinc finger (CCCH type) helica... Potri.002G204750
[exp]
18.00 0.5555
AT1G53210 sodium/calcium exchanger famil... Potri.004G052800
[exp]
18.54 0.5810
AT5G37930 Protein with RING/U-box and TR... Potri.004G091900
[exp]
27.03 0.4836
AT1G50200 ACD, ALATS Alanyl-tRNA synthetase (.1.2) Potri.007G070250
[exp]
32.20 0.5263
AT2G47270 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA... Potri.002G193300
[exp]
37.94 0.5248
AT5G27820 Ribosomal L18p/L5e family prot... Potri.005G068300
[exp]
60.86 0.4852

Potri.012G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.