Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74160 730 / 0 unknown protein AT1G18620 594 / 0 unknown protein AT3G02170 259 / 2e-72 LNG2 longifolia2 (.1) AT5G15580 254 / 2e-70 LNG1 longifolia1 (.1) AT5G15581 55 / 6e-09 unknown protein AT3G63430 57 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058900 [exp] 1617 / 0 AT1G74160 795 / 0.0 unknown protein Potri.017G095000 [exp] 562 / 0 AT1G74160 399 / 3e-122 unknown protein Potri.002G046700 [exp] 65 / 2e-10 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 56 / 1e-07 AT3G63430 245 / 3e-72 unknown protein Potri.015G135200 [exp] 45 / 0.0003 AT5G62170 239 / 2e-68 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017857 [exp] 1081 / 0 AT1G74160 752 / 0.0 unknown protein Lus10034678 [exp] 764 / 0 AT1G74160 594 / 0.0 unknown protein Lus10034677 [exp] 341 / 1e-108 AT1G74160 182 / 1e-51 unknown protein Lus10021148 [exp] 255 / 5e-75 AT1G74160 236 / 9e-69 unknown protein Lus10003090 [exp] 69 / 2e-11 AT3G63430 236 / 1e-68 unknown protein Lus10018750 [exp] 58 / 5e-08 AT3G63430 248 / 6e-73 unknown protein Lus10024836 [exp] 55 / 3e-07 AT3G63430 246 / 3e-72 unknown protein Lus10014716 [exp] 53 / 1e-06 AT3G63430 227 / 2e-65 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.012G061900.4 pacid=42783314 polypeptide=Potri.012G061900.4.p locus=Potri.012G061900 ID=Potri.012G061900.4.v4.1 annot-version=v4.1 ATGGCTGCAAAACTTTTACATTCCTTAGCAGATGATAATCCAGATTTGCAAAAGCAGATAGGGTGCATGACTGGGATTTTTCAAATATTTGATCGTCACC AGGTCCTCACCGGTAGGCGCCTCAACACGAAGATGCTTCCTCCAGGTGATTTCCACTACAAAAATGGCAGATCAGAAAGGGAGAACACAGCAGTTGACAG TCATTTAAACAGGAGTTTGATTGAGAAGCAAAGAATTTCTACAGAATCATCAAGAGCATCTTTCTCATCTTCTTGCTCATCTTCCTTGTCGTCTCTGGAC TGCAATAAAACTGCTCAACCAGAAGCATCTTCCTTTGACAGAATAATTTTCCCTGAAACTCATTCAAGGGACCCTGTTATAACTCAGCCAAATACCTCTG CACATTCAGGGCGGCAATCTTTTGATCTTCGAGATGTTGTCAAGGATTCTATGTATAGAGAGGCCAGAGGGCTATCAGTCAAAACTACAGCAAAAGAAGA AGCAATGAGCCATATAGTGAAGCATAAAGATTCCCCAAGGCCATCACAGGCCTCCAGATATGCTGATGGATCTTATGGAGTTGGGAAAACAGGAAAGCAA AATGCTTCTCCTGTTGATCTCAAGGAGTCTCTTGGAGTTCTTGCTAAACTTCGTGAAGCACCATGGTATAATAATGAAACTAAAGAGCGTCCAAGATCAT TGTATGAAGCAAAAGATGGATCTTGGCATACAATTCGAAAAGATGCTCCACGGTTTTCTTGTGATGGACAGGAGATCAATCATTTGTCTTTTGAATCACG AGATACCATTAAGTCCACCCCAAAGCTAACAGAGCTCCCAAGACTTTCACTGGATAGTAGAGTAATTTCAATGCGTGGATCCAACACTGATTCAAGATCA AATTACCTTTCAAAAGATATTCAAAGTAGCAGCAACTCGAATGAAGAGATCTTTAATCTACAGCAATCATGTGAAACTCAGAAACGTCCTCCTAGCGTGG TAGCCAAGCTGATGGGCTTGGAAGAATTGCCAGATTCTGCTTACAACAGCTATAGTCAGCCGGGTTTGATCCAGAACTTGCCCGTGGAACATGATAATTC CTTCTCAAGATCATTGAAAATAAATGATCTAAACAGACCAATACGAATTCCGAAGTCCCCCAGAAACTCAATAAAAGATCCTGTATCACCACGGTGGAAA AATCCTGATTTGGTCATGAAACCCATTTCAAGGCAGCCAATTGAACCAGCACCATGGAAGCAGCTGAATGGAAGTCGAAGTTCTCAGGAACAACCTTTCA AGCCCGCAAAACTTTCTGGGAAGACATCAAATTCAATCACTTCAGTTTTCTGTGATATTGAGATGAGATTGAAGGATCTTGAGTTCAATCAATCTGGAAA GGATCTCAGAGCTCTTAAACAGATTCTGGAAGCAATGCAGGCTAAGGGGCTCTTGGAGACTAGTAAAGAAGAGCAGGCTTCGAATTTTGTACCCCAAAGA GTTCAGGAACCAAAATGTAGCAGTCCTGGTCAAAAGCCAAGGTTGCTAAACCAACAGAACAATCATGTTGGTGTTCCCACAAATAAAAGTTCTGATACTT TGAGGTCTTGTGAATCCCCAATCGTGATCATGAAACCTGCCAAACTAGTTGAGAAATCTGGTATTCCTGCTTCCTCAGTAATTACAACAGCTGGGCTTCA TAAAATTCCAACCAGTGGATATGCAGACAGTAAGAAGGGATCCATTAATAGCCGAACAACTAAAGATCAATCTCCAAGAAACAGCAAGAGAGATTCTTCT GCCAGCTCCAGTGATAAGAGAACTGCTGTCAAGAATACAAAATCAACTCAATCCTCAACAAGATCCCAACAAGGGCCAAAAGAAAGCTACACGGATTCCG TAAAGAGTTCAGGATCTGTGAGCCTGAGACTCCAACAGAAGAAACTTGACCTAGAGAAGCTATCTTGTCCACCTACCCCTCCATCTGATACTGGCAAACC AAGAAGACAATCCAACAGGCAGCCAACAGAAATAGGTTCCCCTGGTGGAAAACACAGGGTAAAATATCCCAAATTTGCAGAGAGTGATGACCAATTTAGT CAGATAAGTGATGAATCAAGAACCTCGAGTCACCAAGGAGATGACACATCTTTGCAATCTGATGGTACTGTTTTTGACTTAAAGAAGGGTATTGAAGTCA CCAGCACCCAACTATTTACTGAGAACTATGGTGACCTGAGTCCTACCCTAAATGCTACCAGAAGCTTAGTTTCTGGCTCACTACAGAAAAAATCAACATC GATGTTTGAAGAAGACAGGACATCACGGGAACTTCTTGTTGCACCAGAGCATCCTAGTCCTGTCTCTGTACTTGATGCATTGGTATATAGAGATGATGCA TTATCTCCTGTAAAGCAGATACCAAATATGCTCAAAGGGGAAGGCGCTAAAGATTCCCATGACCAACAGAGTGAAGATCAGTGGAACCTTGCAGATAACT TGTCTAACAGCGTGACCTCTGTCCTCTCTATAGAGATCAATCCCAGGAAATTACAAAACATTGAAAATTTGGTACAAAAGCTTAGACGATTAAACTCCAC TCACAATGAAGCGAGCACAGATTACATAGCATCGCTTTGTGAGAACCCAAATCCAGACCACAGATACATTTCAGAGATTTTGTTAGCTTCTGGTCTTCTA CTCAGAGACGTTGGCTCTGGCCTGACAACATTTCAACTCCACCCATCAGGTTACCCCATTAACCCAGAGTTATTCATGGTATTGGAGCAAACCAAGGCCA GCAATTCAGTTTCAAAAGAAGAATGTAGACCTGGAAAGTCTTTCCATTCAAAACCAAACCTGGAGAAGTTTCATAGGAAGCTCATATTTGATGCTGTTAA TGAAATTCTTGTCAAAAAGTTGGCTTCAGTGGGGCCCTCTCCTGAGCCTTGGTTGAAGTCTGATAAGCTGGCAAAGAAGGCGCTCAGTGCTCAAAAGCTT CTGAAAGAATTATGTTCGGATATGGAACAACTTCAAATCAAGAAATCAGAATGCAGCTTAGAGGATGAGGAGGATGGTTTGAAAAGCTTTTTATGGGATG ATGTGATGCATCGGTCAGAGAGCTGGATAGATTTTCACAGTGAGATTTCTGGCATAGTGTTAGATGTTGAGCGTTTGGTCTTCAAGGACTTAGTTAATGA GATTGTGATTAGTGAGGCAGCTGGTTTACGCACCAAACCACGTAGGTGTCGGCAGCTGTTTGGGAAGTAG
AA sequence Show only first row Show all	>Potri.012G061900.4 pacid=42783314 polypeptide=Potri.012G061900.4.p locus=Potri.012G061900 ID=Potri.012G061900.4.v4.1 annot-version=v4.1 MAAKLLHSLADDNPDLQKQIGCMTGIFQIFDRHQVLTGRRLNTKMLPPGDFHYKNGRSERENTAVDSHLNRSLIEKQRISTESSRASFSSSCSSSLSSLD CNKTAQPEASSFDRIIFPETHSRDPVITQPNTSAHSGRQSFDLRDVVKDSMYREARGLSVKTTAKEEAMSHIVKHKDSPRPSQASRYADGSYGVGKTGKQ NASPVDLKESLGVLAKLREAPWYNNETKERPRSLYEAKDGSWHTIRKDAPRFSCDGQEINHLSFESRDTIKSTPKLTELPRLSLDSRVISMRGSNTDSRS NYLSKDIQSSSNSNEEIFNLQQSCETQKRPPSVVAKLMGLEELPDSAYNSYSQPGLIQNLPVEHDNSFSRSLKINDLNRPIRIPKSPRNSIKDPVSPRWK NPDLVMKPISRQPIEPAPWKQLNGSRSSQEQPFKPAKLSGKTSNSITSVFCDIEMRLKDLEFNQSGKDLRALKQILEAMQAKGLLETSKEEQASNFVPQR VQEPKCSSPGQKPRLLNQQNNHVGVPTNKSSDTLRSCESPIVIMKPAKLVEKSGIPASSVITTAGLHKIPTSGYADSKKGSINSRTTKDQSPRNSKRDSS ASSSDKRTAVKNTKSTQSSTRSQQGPKESYTDSVKSSGSVSLRLQQKKLDLEKLSCPPTPPSDTGKPRRQSNRQPTEIGSPGGKHRVKYPKFAESDDQFS QISDESRTSSHQGDDTSLQSDGTVFDLKKGIEVTSTQLFTENYGDLSPTLNATRSLVSGSLQKKSTSMFEEDRTSRELLVAPEHPSPVSVLDALVYRDDA LSPVKQIPNMLKGEGAKDSHDQQSEDQWNLADNLSNSVTSVLSIEINPRKLQNIENLVQKLRRLNSTHNEASTDYIASLCENPNPDHRYISEILLASGLL LRDVGSGLTTFQLHPSGYPINPELFMVLEQTKASNSVSKEECRPGKSFHSKPNLEKFHRKLIFDAVNEILVKKLASVGPSPEPWLKSDKLAKKALSAQKL LKELCSDMEQLQIKKSECSLEDEEDGLKSFLWDDVMHRSESWIDFHSEISGIVLDVERLVFKDLVNEIVISEAAGLRTKPRRCRQLFGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74160			unknown protein		Potri.012G061900 [exp]	0	1
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	1.00	0.8180
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	2.64	0.7195
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	3.87	0.7551
AT1G73460			Protein kinase superfamily pro...		Potri.015G033400 [exp]	11.22	0.7229
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	12.16	0.7748
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	14.49	0.7026
AT1G70100			unknown protein		Potri.008G192800 [exp]	18.76	0.7046
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	24.59	0.7247
					Potri.019G023500 [exp]	30.85	0.6937
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.009G061000 [exp]	32.49	0.6759

Compare expression of checked genes

Potri.012G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.