Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18610 630 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 554 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G04420 117 / 9e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT2G36360 115 / 3e-27 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G05420 115 / 6e-27 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G18590 110 / 3e-25 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G27630 109 / 6e-25 ACBP5 acyl-CoA binding protein 5 (.1) AT3G07720 101 / 2e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G04670 99 / 2e-21 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G48180 92 / 3e-20 NSP5 nitrile specifier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059400 [exp] 942 / 0 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 188 / 3e-52 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 182 / 8e-50 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G031200 [exp] 123 / 6e-30 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 122 / 1e-29 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G024700 [exp] 120 / 5e-29 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.013G018800 [exp] 120 / 1e-28 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.014G168300 [exp] 111 / 1e-26 AT3G07720 484 / 1e-173 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G015200 [exp] 113 / 4e-26 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017860 [exp] 387 / 5e-129 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010913 [exp] 156 / 9e-41 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 155 / 1e-40 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031497 [exp] 124 / 9e-30 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10028825 [exp] 117 / 8e-28 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037933 [exp] 117 / 2e-27 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10015176 [exp] 117 / 3e-27 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 114 / 1e-26 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10043424 [exp] 112 / 2e-26 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10002756 [exp] 113 / 5e-26 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.012G062100.2 pacid=42783043 polypeptide=Potri.012G062100.2.p locus=Potri.012G062100 ID=Potri.012G062100.2.v4.1 annot-version=v4.1 ATGAGATGGGAAAGGGTGCAGCAGCAGTTACAACAAGGGGTTGCAATAGAAGAGTTAAATGGACCAAGGAAGAGGTGGGGACACACTTGTAATTCGATTA AAGGAGGAAGATTTCTCTATGTTTTTGGTGGCTATGGAAAGGATAACTGCCAGACCAACCAAGTCCATGTCTTTGACACTGTTAACCAGACTTGGAGCCA GCCAATGTTAAATGGCACACTGCCAGTTCCGAGAGATAGCCACTCTTGTACAACTGTTGGTGAAAATCTCTATGTGTTTGGGGGTACTGATGGGATGAAC CCTCTCAAGGATCTGCGTATCTTAGATACTTCATCACATACTTGGATATCTCCAAATGTAAGAGGTGATGGACCAGATGCACGGGAGGGTCATAGCGCTG CCCTTGTTGGCAAACGACTTTTCATATTTGGTGGCTGTGGAAAATCTTCAGATAATAGTCATGAAATCTATTACAATGATCTTTATATCTTGAATACAGA GACATTTGTATGGAAACAAGCAATAACAACAGGCACTCCACCTTCTGCCCGCGATAGCCATACTTGCTCATCTTGGAGGGATAAAATCATTGTGATTGGT GGTGAAGATGGGCATGATTATTATTTGTCAGATGTCCACATCCTAGATACAGAAACTCTTGTTTGGAAGGAGCTGAACACATCGGGCCAAAAGTTGCCAC CTCGAGCTGGCCATTCTACTGTTTCTTTTGGCAAGAATTTATTTGTTTTTGGTGGATTTACAGATGCTCAAAATCTATATGATGACCTACATATGCTTAA TGTTGAAACTGGCATTTGGACCATGGTGATGACAACTGGAGATGGACCTTCTGCCAGATTTTCTGTGGCTGGGGACTGCTTGGATCCACTGAAGGGTGGT GTGCTTGTGTTCATTGGTGGCTGCAATAAGAGTCTTGAGGCACTGGAAGATATGTATTATTTACACACAGGTCTCACAAGAGTGCAAGATGAATGGCGTA TGGAAAAGTTATCTCTGAAAAAACAATTGAAACTAAAGTGCCAAGAACAAAATCTTAATTCTTCTGTGCATGAAAAAGTTTTAGTCCGAATTGACACAAA TGCTGACTTTCACCACACCTTTCTGAGTTATGCCCAACCAGGCAGAGAAAATTTCCCGTTGAATCAAACACAGCGTGATCATGGGAAGAAGACATTTCAA GCCAAAGTTACTGAAAGCCTTCCTCATGGATATACCATTGAGACTATTGTAGATGGAAAGCTTCTACGTGGAATATTATTTTCCAACAAGCAAAGTTCTC CCCAGATAGTTAGCCACAATAACCGCAGGAAAAGGGCAAGTGCTGAAAGTGGTGTTGTATTGAATGGTGACTACAACAGCAAATCAAAAACTTATAAAAC CCTCATCCAGGATGCAGTAGAAAACATTCAGCCAGACAACGCTCATGGGATGGAATCCACAGCACAGGAACCCAAGACGGAAGCTGCTGCTGTCCCTGAT TTAAAAAATCTGGCTTCCTCTAATGTTCATCTGTCTCATGAGGTTCCTCCAAATGCAGAACCACCAGCGACTCCTACTCTGAATTTGAATGATGATATGA CCTCTGATACAGGATTTCTAAAAGAGAAGTCTACTGCAGCAGAGGGCCTACCACTTTGTCACTAA
AA sequence Show only first row Show all	>Potri.012G062100.2 pacid=42783043 polypeptide=Potri.012G062100.2.p locus=Potri.012G062100 ID=Potri.012G062100.2.v4.1 annot-version=v4.1 MRWERVQQQLQQGVAIEELNGPRKRWGHTCNSIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPMLNGTLPVPRDSHSCTTVGENLYVFGGTDGMN PLKDLRILDTSSHTWISPNVRGDGPDAREGHSAALVGKRLFIFGGCGKSSDNSHEIYYNDLYILNTETFVWKQAITTGTPPSARDSHTCSSWRDKIIVIG GEDGHDYYLSDVHILDTETLVWKELNTSGQKLPPRAGHSTVSFGKNLFVFGGFTDAQNLYDDLHMLNVETGIWTMVMTTGDGPSARFSVAGDCLDPLKGG VLVFIGGCNKSLEALEDMYYLHTGLTRVQDEWRMEKLSLKKQLKLKCQEQNLNSSVHEKVLVRIDTNADFHHTFLSYAQPGRENFPLNQTQRDHGKKTFQ AKVTESLPHGYTIETIVDGKLLRGILFSNKQSSPQIVSHNNRRKRASAESGVVLNGDYNSKSKTYKTLIQDAVENIQPDNAHGMESTAQEPKTEAAAVPD LKNLASSNVHLSHEVPPNAEPPATPTLNLNDDMTSDTGFLKEKSTAAEGLPLCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18610			Galactose oxidase/kelch repeat...		Potri.012G062100 [exp]	0	1
AT3G13670			Protein kinase family protein ...		Potri.003G215700 [exp]	6.00	0.7333
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	6.32	0.7641
AT5G22760			PHD finger family protein (.1)		Potri.009G150200 [exp]	13.22	0.6484
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	24.12	0.7029
AT4G11970			YTH family protein (.1.2.3)		Potri.001G113500 [exp]	27.56	0.7163
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	32.31	0.7164	Pt-PIL5.1
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.011G151200 [exp]	38.36	0.6618
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.004G032700 [exp]	43.30	0.6701
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	55.45	0.6585
AT1G78810			unknown protein		Potri.011G109600 [exp]	56.66	0.6728

Compare expression of checked genes

Potri.012G062100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.