Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 586 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 562 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 533 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT3G02210 526 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 392 / 7e-134 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 189 / 5e-58 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 141 / 2e-36 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 135 / 3e-34 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 126 / 4e-31 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 122 / 1e-29 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060100 [exp] 600 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 590 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 570 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 558 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 550 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 496 / 3e-175 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 491 / 3e-173 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 419 / 1e-144 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 375 / 3e-127 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017863 [exp] 588 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 587 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 580 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 575 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 565 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 554 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 553 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 543 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 543 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 527 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.012G062200.2 pacid=42782795 polypeptide=Potri.012G062200.2.p locus=Potri.012G062200 ID=Potri.012G062200.2.v4.1 annot-version=v4.1 ATGGAACTTGATAAGCTTAAGTTCTCGATTGTCTTGACTATTTTTTGTGCCATGACAGTTTTATGTGCAGTGGCTTACGATCCATTGGATCCCAATGGGA GCATAAATATAAAATGGGATATCCTGTCTTGGACTCCTGATGGCTATGTTGCAGTTGTGTCGATGAATAACTTTCAAATGTATCGGCAAATAATGAGCCC AGGGTGGACATTAGGCTGGACATGGGCTAAGAAAGAAGTGATTTGGTCAATGGTGGGAGCCCAAGCCACTGATCAAGGAGATTGTTCCAATTTCAAAGGC AACATTCCACACTGCTGTAAGAGAAATCCTACAGTTATTGACTTGCTCCATGGAGTCCCTAAAACCCAACAGTATTCTGATTGCTGCAAGGGTGGTGTTT TGGCATCTTGGGGACAAGATCCTACAGCCGCAGTTTCATCATTTCAGCTCAGTGTTGGTCTCTCTGGTACATCCAATACAACAGTTGCACTGCCCCAGAA TTTCTTTTTGCTTGGTCCAGGACCAGGCTATACGTGCAGTGCAGCAACAATTGTTTCACCTTCAGTTTTCTTCTCAAGTGATGGGCAGAGAAAAACACAA GCAATGATGACCTGGACTGTGACATGCTCTTACTCGCAAATGCTTGTGTCTAAGAATCCCTCCTGTTGTGTTTCTTTGTCATCCTTTTACAACTCTAAGA TCACTCCCTGTCCGTCCTGTTCTTGTGGGTGCCAGAATAATGAAAATACTAGCTGTGTCATGAGCAATTCCAGAATTTCAAGTGTTGTAGAAGCAAGTAC ATCAATGCTTCAGTGTACTTCACACATGTGCCCAATCCGGGTGCATTGGCATGTTAAGGCCAACTACAAGGAGTATTGGCGTGTGAAGATTACAGTCACC AATTTCAATTATCGGAAGAATTTCACACAGTGGACTCTTGTTGCTCAGCATCCAAACCTCAACAATGTAACCAGAGTTTATAGCTTTCTCTACAAGTCAT TTATGCTCTTCAATACCATAAACGATACTGCCATGTTTTATGGGAACAAAAATAAGAATGACATGCTCCTGGAAGCCGGGCAAAATGGGAATGTTCAATC AGAGATTCTGTTTGGAAAGGACATGAGCAGATACACATTGGAGCATGGCTGGGGTTTCCCTTCGAGAATTTACTTCAACGGTGATGAATGTATGATGCCT CCTCCTGATTCATATCCATTTCTACCCAACTCTGCTCCTTTCAGTCCAACAGCCTCCTCAACACCAGCAATATTTCTAATTCTCATCTTGCTAGCCCTTC GGTGTTCGTTGTTCTAG
AA sequence Show only first row Show all	>Potri.012G062200.2 pacid=42782795 polypeptide=Potri.012G062200.2.p locus=Potri.012G062200 ID=Potri.012G062200.2.v4.1 annot-version=v4.1 MELDKLKFSIVLTIFCAMTVLCAVAYDPLDPNGSINIKWDILSWTPDGYVAVVSMNNFQMYRQIMSPGWTLGWTWAKKEVIWSMVGAQATDQGDCSNFKG NIPHCCKRNPTVIDLLHGVPKTQQYSDCCKGGVLASWGQDPTAAVSSFQLSVGLSGTSNTTVALPQNFFLLGPGPGYTCSAATIVSPSVFFSSDGQRKTQ AMMTWTVTCSYSQMLVSKNPSCCVSLSSFYNSKITPCPSCSCGCQNNENTSCVMSNSRISSVVEASTSMLQCTSHMCPIRVHWHVKANYKEYWRVKITVT NFNYRKNFTQWTLVAQHPNLNNVTRVYSFLYKSFMLFNTINDTAMFYGNKNKNDMLLEAGQNGNVQSEILFGKDMSRYTLEHGWGFPSRIYFNGDECMMP PPDSYPFLPNSAPFSPTASSTPAIFLILILLALRCSLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.012G062200 [exp]	0	1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.008G072800 [exp]	3.74	0.8893
AT3G50610			unknown protein		Potri.005G136700 [exp]	4.47	0.9134
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G095000 [exp]	9.94	0.9186
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	10.81	0.9324
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.006G206900 [exp]	12.48	0.9003
					Potri.012G045950 [exp]	13.85	0.9229
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	19.28	0.9232
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.010G139500 [exp]	20.78	0.9189
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113400 [exp]	26.26	0.8885
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	34.20	0.8805

Compare expression of checked genes

Potri.012G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.