Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17400 416 / 4e-147 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT4G28390 304 / 6e-102 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G13490 297 / 3e-99 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 285 / 2e-94 AAC1 ADP/ATP carrier 1 (.1.2) AT5G56450 137 / 8e-38 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G26180 85 / 1e-18 Mitochondrial substrate carrier family protein (.1) AT4G01100 84 / 4e-18 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G55640 82 / 1e-17 Mitochondrial substrate carrier family protein (.1) AT2G37890 81 / 3e-17 Mitochondrial substrate carrier family protein (.1) AT5G01500 79 / 2e-16 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139100 [exp] 308 / 2e-103 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 305 / 2e-102 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.001G267800 [exp] 301 / 2e-100 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.009G062200 [exp] 299 / 6e-100 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.003G204600 [exp] 298 / 1e-99 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G019400 [exp] 296 / 7e-99 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.006G227100 [exp] 142 / 6e-40 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 97 / 1e-22 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 91 / 2e-20 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034658 [exp] 424 / 4e-150 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 407 / 1e-143 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10039847 [exp] 303 / 1e-101 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10019701 [exp] 303 / 2e-101 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 301 / 6e-101 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 301 / 8e-101 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 300 / 4e-100 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 293 / 2e-97 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 291 / 6e-97 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10018612 [exp] 186 / 3e-58 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.012G062500.4 pacid=42782645 polypeptide=Potri.012G062500.4.p locus=Potri.012G062500 ID=Potri.012G062500.4.v4.1 annot-version=v4.1 ATGGGGCCGAAATCAAAATCTGAGAAATTTTCTGCAGAATTTGTAATGGGAGGAGCGGCAGCAATAGTATCAAAGAGCGCTGCAGCACCAATTGAAAGAG TGAAGCTTTTGTTGCAAAATCAAGGAGAGATGATTAAGAGAGGCCAACTCAAAACACCTTACACGGGGATTCGTGATTGTTTCAAAAGGGTTTTTAGAGA AGAAGGTCTTTTTTCGTTTTGGAGAGATATAAAAGACAATGTAGAAACCTTTCTTACCACAAAACCCAACATCTTACACTTCTGTACTGCTTTCAATTTT GCATTCAAAGGTTACTTCAAGGGCCTTTTTGGATGCTCAAAAGAGAAAGATGGTTACATAAAGTGGTTTACCGCGAATGTTGCTTCTGGAAGTGCAGCTG GGGCAACAACATCGTTGTTTCTGTATCATTTGGATTATGCACGTACCCGTCTAGGAACTGATGCTAGAGAGTGCCCGATAAATGGTCAACACCAATTTAG AGGGTTATTTGATGTATACAGAAAAACTTTGTCAAGTGATGGAATTTTAGGGCTGTATAGGGGATTTGGGGTTTCAATAATGGGAATTAGTCTTTACAGA GGCATGTATTTTGGTATCTATGACACCATGAAGCCAATCATTTTGGTGGGATCTTTTGAGGGGAATTTCTTTGCTAGTTTCTTGTTAGGTTGGAGCATCA CCACTGTATCTGGAGTCTGCGCTTATCCCTTTGACACTCTGAGACGGAGAATGATGCTTACTTCTGGAAATCCCGTAAAGTATCGCAACTCCATGCATGC TTTTCATGAGATCATTCGTCTTGAAGGTTTTCAAGCACTATACCGAGGAGTTACTGCAAACATGCTTGCTGGAGTGGCAGGAGCTGGAGTACTTGCTGGG TATGATCAGCTGCACAGAATTGCAGTTAAATATGGCTATGTTTTGGAACCACGCCAGAATACCATGAAGTAA
AA sequence Show only first row Show all	>Potri.012G062500.4 pacid=42782645 polypeptide=Potri.012G062500.4.p locus=Potri.012G062500 ID=Potri.012G062500.4.v4.1 annot-version=v4.1 MGPKSKSEKFSAEFVMGGAAAIVSKSAAAPIERVKLLLQNQGEMIKRGQLKTPYTGIRDCFKRVFREEGLFSFWRDIKDNVETFLTTKPNILHFCTAFNF AFKGYFKGLFGCSKEKDGYIKWFTANVASGSAAGATTSLFLYHLDYARTRLGTDARECPINGQHQFRGLFDVYRKTLSSDGILGLYRGFGVSIMGISLYR GMYFGIYDTMKPIILVGSFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGNPVKYRNSMHAFHEIIRLEGFQALYRGVTANMLAGVAGAGVLAG YDQLHRIAVKYGYVLEPRQNTMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Potri.012G062500 [exp]	0	1
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	1.00	0.8179
					Potri.001G015450 [exp]	6.48	0.6780
AT5G11870			Alkaline phytoceramidase (aPHC...		Potri.006G228700 [exp]	10.09	0.6708
AT3G57810			Cysteine proteinases superfami...		Potri.016G050900 [exp]	10.48	0.6855
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.011G066600 [exp]	12.12	0.6907
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.002G175000 [exp]	13.52	0.7062	Pt-RSP31.2
AT1G51310			transferases;tRNA (5-methylami...		Potri.001G259000 [exp]	15.03	0.7776
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	19.28	0.6262
AT4G16060			unknown protein		Potri.010G006000 [exp]	23.49	0.6887
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030700 [exp]	28.19	0.6716

Compare expression of checked genes

Potri.012G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.