Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25800 1116 / 0 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2) AT1G13320 1085 / 0 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3) AT1G25490 1046 / 0 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT1G64790 50 / 7e-06 ILA ILITYHIA (.1.2) AT5G64270 47 / 5e-05 splicing factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127500 [exp] 1115 / 0 AT3G25800 1086 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.008G118500 [exp] 1108 / 0 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.019G024200 [exp] 52 / 2e-06 AT1G64790 3726 / 0.0 ILITYHIA (.1.2) Potri.001G310900 [exp] 46 / 0.0001 AT5G64270 2001 / 0.0 splicing factor, putative (.1) Potri.017G050800 [exp] 45 / 0.0001 AT5G64270 2020 / 0.0 splicing factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035038 [exp] 1107 / 0 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 1103 / 0 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10034299 [exp] 1074 / 0 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10041472 [exp] 704 / 0 AT3G25800 867 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10003101 [exp] 54 / 5e-07 AT1G64790 2349 / 0.0 ILITYHIA (.1.2) Lus10033347 [exp] 45 / 0.0002 AT5G64270 2168 / 0.0 splicing factor, putative (.1) Lus10004767 [exp] 43 / 0.001 AT1G64790 3557 / 0.0 ILITYHIA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.012G062700.1 pacid=42783614 polypeptide=Potri.012G062700.1.p locus=Potri.012G062700 ID=Potri.012G062700.1.v4.1 annot-version=v4.1 ATGGCGACGATCGACGAGCCTCTATACCCGATCGCCGTTCTAATCGACGAGTTAAAAAACGAGGACATTCAGCTCCGATTGAACTCAATTCGTCGCCTTT CTACCATCGCTCGTGCCCTCGGCGAGGAGCGAACTCGCAAGGAATTAATTCCTTTCCTAAGCGAGAATAACGACGACGACGACGAAGTGCTTCTCGCTAT GGCTGATGAATTAGGAGTTTTTATTCCCTATGTTGGCGGTGTTGAGTATGCCAATGTGCTGCTTCCGCCTCTCGAGACGCTCTGCACCGTCGAGGAAACT TGTGTTAGAGATAAATCAGTCGAGTCTTTGTGTAGAATCGGAACACAGATGATAGAGCAAGACTTAGTCGACCATTTTATTCCGCTCGTCAAGAGATTGG CAGCGGGTGAATGGTTTACTGCACGGGTTTCGTCCTGTGGTTTGTTTCATATTGCTTATCCCAGTGCTCCAGAGACTTTAAAGACTGAATTACGAGCCCT ATACAGTCAGCTTTGTCAAGATGATATGCCCATGGTTCGTAGATCTGCTGCCACTAATCTAGGAAAGTTTGCTGCTACTGTTGAGCCTGTTCATTTGAAG ACTGATATCATGTCTATATTTGAGGATTTGACTCAGGATGATCAAGATTCTGTTCGATTATTGGCTGTTGAGGGTTGTGCAGCTCTTGGAAAATTGCTGG AACCCCAAGATTGTGTGGCGCATATCCTTCCAGTCATAGTTAATTTCTCACAGGATAAGTCTTGGCGTGTTCGCTACATGGTTGCAAATCAATTGTATGA GCTCTGTGAAGCTGTTGGTCCTGAGCCTACCAGGTCTGACCTGGTTCCTGCATATGTTCGGCTACTTCGTGATAATGAAGCTGAAGTACGTATAGCTGCA GCAGGAAAAGTAACTAAGTTTTGCAGGATTTTGAATCCAGAAGTTGCAATTCAGCATATTCTTCCTTGTGTAAAAGATTTATCCACAGATTCATCCCAAC ATGTTCGTTCTGCTTTGGCTTCCGTTATAATGGGAATGGCTCCTGTTTTGGGGAAGGATGCAACAATTGAGCAGCTGCTTCCAATTTTCCTCTCTCTCTT GAAAGATGAATTTCCTGATGTTAGATTGAATATTATCAGCAAACTTGATCAAGTCAATCAGGTGATTGGAATTGATTTGCTTTCCCAATCTCTATTGCCA GCAATTGTGGAGCTTGCAGAGGATAGACATTGGAGAGTTCGGCTTGCAATTATAGAATACATACCATTGCTGGCAAGTCAGTTGGGAGTAGGGTTTTTCG ATGATAAGCTTGGTGCTCTGTGCATGCAATGGTTGAAAGATAAGGTTTACTCAATTCGTGATGCAGCTGCTAACAATGTGAAGCGCCTTGCTGAAGAATT TGGCCCAGATTGGGCAATGCAGCACATAGTTCCTCAGGTTTTGGACCTGATTAACAACCCACACTATCTGTATCGGATGACCATTTTACATGCAGTTTCT CTACTCTCTCCTGTAATGGGGTCGGAAATTACCTGTTCCCAGCTTCTTCCTATTGTCATCAATGCATCAAAAGACAGGGTACCCAACATCAAATTTAATG TGGCTAAGGTGTTGCAATCACTTATTCCTATAGTTGATCAGTCTGTTGTGGAGAAGACAATTCGTCCATGTTTGGTTGAGCTAAGTGAGGACCCAGATGT TGATGTAAGATTCTTTGCTACTCAAGCACTACAGTCAAGTGATCATGTCATGATGTCTACCTAG
AA sequence Show only first row Show all	>Potri.012G062700.1 pacid=42783614 polypeptide=Potri.012G062700.1.p locus=Potri.012G062700 ID=Potri.012G062700.1.v4.1 annot-version=v4.1 MATIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMADELGVFIPYVGGVEYANVLLPPLETLCTVEET CVRDKSVESLCRIGTQMIEQDLVDHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRALYSQLCQDDMPMVRRSAATNLGKFAATVEPVHLK TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA AGKVTKFCRILNPEVAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLDLINNPHYLYRMTILHAVS LLSPVMGSEITCSQLLPIVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPCLVELSEDPDVDVRFFATQALQSSDHVMMST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.012G062700 [exp]	0	1
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.006G142800 [exp]	4.79	0.8162
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	6.00	0.8294
AT2G45060			Uncharacterised conserved prot...		Potri.002G142900 [exp]	15.84	0.8554
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.010G203500 [exp]	18.54	0.8298	Pt-CTIMC.2
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.002G255900 [exp]	18.89	0.8396
AT1G29690		CAD1	constitutively activated cell ...		Potri.016G135100 [exp]	19.28	0.7856
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Potri.008G132500 [exp]	24.04	0.8419
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.010G192200 [exp]	39.79	0.8164	Pt-RPN8.1
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	42.40	0.8001
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	42.44	0.8028

Compare expression of checked genes

Potri.012G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.