Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08100 485 / 2e-174 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 328 / 2e-112 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT5G61540 79 / 3e-16 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT4G00590 72 / 6e-14 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022900 [exp] 330 / 6e-113 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.002G122900 [exp] 330 / 1e-112 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G080600 [exp] 81 / 7e-17 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G191900 [exp] 74 / 2e-14 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034655 [exp] 509 / 0 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034668 [exp] 495 / 4e-178 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 318 / 5e-108 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10017879 [exp] 150 / 9e-45 AT5G08100 157 / 4e-48 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10040935 [exp] 87 / 6e-19 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 85 / 3e-18 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10020385 [exp] 72 / 2e-13 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009560 [exp] 70 / 3e-13 AT5G61540 518 / 0.0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF01112 [poplar] [flax] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Potri.012G063400.1 pacid=42784015 polypeptide=Potri.012G063400.1.p locus=Potri.012G063400 ID=Potri.012G063400.1.v4.1 annot-version=v4.1 ATGGGGTGGGCAATTGCACTACACGGGGGGGCCGGAGATATATCACTTTCACTTCCAGCAGAGCGTCGCCTCCCTCGCGAGGCGGCTCTCCATCACTGCC TCCAGATTGGTGTCGCCGCTCTCAAAGCCCAAAAGCACCCACTCGATGTTGTCGAACTTGTGGTCCGGGAATTAGAGAACCATCCAAACTTTAATGCTGG GAAAGGATCGGTTTTGACTAGCAGGGGAACTGTTGAGATGGAAGCTTGTATCATGGATGGAAATTCAAAGAAATGTGGAGCTGTTTCTGGTCTCACCACT GTTGTTAATGCCATATCTCTAGCACGATTGGTCATGGACAACACTCCTCATATATATCTTGGATTTGATGGAGCTGAGGCTTTTGCTAGGGAACAAGGTG TTGAGACCGTTGATTCCAGTCATTTCATTACTCCAGAAAATATTGAGAGGCTTAAGCAGGCAAAAGAAGCTGACAGAGTCCAGATGGATTATACACAACC CATTCAGAAAGATGAAAAAAGTGAAAGTCCAACTGGTAATGGAGATAGCCAAATTGGGACTGTTGGATGTGTTGCTGTTGATAAAAATGGGAACTTAGCC ACAGCAACTTCTACAGGTGGGTTTGTTAACAAGATGGTGGGTAGGATTGGAGACACACCCATAATTGGGGCAGGGACATATGCCAACAATCTTTGTGCAG TTTCCGCTACAGGCAAAGGGGAAACAATTATACGCGGCACTGTTGCTCGGGATGTGGCTGCCCTTATGGAGTATAAAGGTCTCTCTCTCAAGGAAGCTGC AGCTCATGTTGTTGAGTGTAATCCAAGAGGGGATGTTGGGTTGGTTGCTGTGTCAGCCAGGGGAGAAGTCACCATGCCATTTAATACAACTGGGATGTTT CGTGCTTGTGCTACTGAAGATGGGTATTCAGAAGTAGGAATATGGCCTTCTGTGCAAGATTGA
AA sequence Show only first row Show all	>Potri.012G063400.1 pacid=42784015 polypeptide=Potri.012G063400.1.p locus=Potri.012G063400 ID=Potri.012G063400.1.v4.1 annot-version=v4.1 MGWAIALHGGAGDISLSLPAERRLPREAALHHCLQIGVAALKAQKHPLDVVELVVRELENHPNFNAGKGSVLTSRGTVEMEACIMDGNSKKCGAVSGLTT VVNAISLARLVMDNTPHIYLGFDGAEAFAREQGVETVDSSHFITPENIERLKQAKEADRVQMDYTQPIQKDEKSESPTGNGDSQIGTVGCVAVDKNGNLA TATSTGGFVNKMVGRIGDTPIIGAGTYANNLCAVSATGKGETIIRGTVARDVAALMEYKGLSLKEAAAHVVECNPRGDVGLVAVSARGEVTMPFNTTGMF RACATEDGYSEVGIWPSVQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Potri.012G063400 [exp]	0	1
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G178200 [exp]	2.64	0.6995
AT3G42860			zinc knuckle (CCHC-type) famil...		Potri.009G094001 [exp]	8.36	0.6415
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121100 [exp]	10.14	0.7407	CYP81B5,IFS1.33
AT2G04900			unknown protein		Potri.014G164500 [exp]	10.48	0.7363
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.012G060100 [exp]	16.79	0.7041
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.005G222601 [exp]	20.63	0.7300
AT3G61113			Ubiquitin related modifier 1 (...		Potri.014G078200 [exp]	23.81	0.6953
					Potri.012G085901 [exp]	27.34	0.7087
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	37.29	0.6808
AT5G10980			Histone superfamily protein (....		Potri.002G026800 [exp]	38.96	0.6609	HTR908

Compare expression of checked genes

Potri.012G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.