Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08110 1190 / 0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) AT1G77030 62 / 2e-09 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT1G27880 58 / 4e-08 DEAD/DEAH box RNA helicase family protein (.1) AT3G22310 57 / 5e-08 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT3G22330 54 / 9e-07 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G27680 53 / 2e-06 RECQSIM RECQ helicase SIM (.1) AT5G63120 47 / 8e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G45810 46 / 0.0001 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 46 / 0.0002 DEA(D/H)-box RNA helicase family protein (.1) AT1G31360 46 / 0.0002 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063201 [exp] 316 / 1e-100 AT5G08110 183 / 5e-54 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.012G063000 [exp] 157 / 6e-45 AT5G08110 56 / 2e-10 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.013G158000 [exp] 62 / 2e-09 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 55 / 4e-07 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G024100 [exp] 54 / 8e-07 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G026400 [exp] 51 / 5e-06 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.016G023100 [exp] 49 / 3e-05 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.008G084700 [exp] 47 / 0.0001 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.010G056500 [exp] 46 / 0.0002 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007978 [exp] 1524 / 0 AT5G08110 1259 / 0.0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Lus10013505 [exp] 595 / 0 AT5G08110 451 / 3e-141 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Lus10038975 [exp] 63 / 1e-09 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 61 / 4e-09 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 58 / 4e-08 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 57 / 8e-08 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10004503 [exp] 52 / 5e-06 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10012874 [exp] 47 / 0.0001 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030523 [exp] 47 / 0.0001 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026219 [exp] 46 / 0.0002 AT3G05740 816 / 0.0 RECQ helicase l1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF09369 [poplar] [flax] DUF1998 Domain of unknown function (DUF1998)
Representative CDS sequence Show only first row Show all	>Potri.012G063500.5 pacid=42782710 polypeptide=Potri.012G063500.5.p locus=Potri.012G063500 ID=Potri.012G063500.5.v4.1 annot-version=v4.1 ATGGAAAGAGAAGTGGAAATAGAAATCCGTACACTCACCGGTGAATCTACGAAGGTGAGAATATCATCAAAAAAAATTGTTAATGACCTCAAACTCCTCT TGATTCATGCATCTTCCTCCCCCAATTTCCATCTCTTCTTCAAGGGAGTGAAATTGAGTTTGAAGACTCCGATCGACACGCTTTCTATTGAGAATGGTGA ATTTCTAGTTCTAGTTCCATTCAACAAGAAAAAAGATCCACCTAAAACCCCAACACCTGATTTTTACAAAAACGCCCCTACAAAACCCTCAATTTCTACC TTGGCAGATTCAACATTTTCTGAGATGATGCAAGACTTGTCGTTTTTATCAGAAAAACCAACCACCAGCACAAGCACAAGCACAAGCACAAACAGTACTG CTGCTACACAGCCCGATTATATGTTTTCCGGATACAAGCGAAAGAGGGGTTTTAAAGATACTCCTACTAGTAGTAGTAGTGATAAAGAGTTGTTTTGTTT TTTATGGAGTGTGTTGCGTTCTCCTAACAAAAACAATTATATTGTCGACGACAAAACAAAATGTGAAAAATTTGTTGAGGTTTTGGATTCATTTAGTTGC TTGACGAATCCACATTCCAGGACATGTGTGTTTTTGGATTTGGGATTGTGTGGAGATAAGAGGCCTTCGTGCTTTTGTCCGGCGTGGCTGAAAAGAATTA TGCAGGCTTTTGCCTTCTTGAATATTTTCACTGCATTTCTTCAAATGCAGAGGCGAGAAATTACCTCGGATTCATTGAAGGACGCCCTAAAGAATCTTGC GAAATCTGGTTTGAAAGCTGGTTTTGAGGATATAGAGCTTCTTTCTGTTCTCTATCCTAAGGTTGTAATTTTTGCTACTAATGATTCTAAGTTTGCTAAT GCTGCTGATGTCTTTGTTATCATCAATTCTGAAACAAAGGATAAGGATGAAATTGGTGAACCTTCTAGAAAAGGTAAAAAATCCCTGTCTTTATCGACCA TATTCAATACAATGAAAAAACAGGAAAGTGCCTTTAAAACTAATTTGTGGGAAGCTGCTAAATTTTTATTGTGCAAAATTGGAAATAGAGTTGCAATGCC ATTTTCCTTGGAAGATCTACTGAAATTTGTGAGGAAAGATGGCATTTCTGTGAGTGAAAGTGAAGCAAAGCAGGCAAAAGGATGCCATTCCTTGGCCTCA AGCTCATATTCATTCCAGACACGATGCCATGAAACAAATCAATTGCTGCCAGTGGAAATGGTTGAACATCTCAGAGAAGGCATTGGATCGAAAGGACAGA TAGTGCATGTTGAAGACATTGACTCTAGAAAACCTATTTATGTGCAAGTACCAAATGTACTCTCAGATAACATGAAGTCTGCTCTAAAATGCATGGGAAT CACTAAATTATACAGTCACCAGGCAGAGTCCATCCTGGCCTCTCTTTCTGGGAAGAATGTCGTGGTGGCAACAATGACATCTAGTGGCAAATCTCTTTGC TATAATGTGCCTGTTCTGGAAGCTTTGTCCCAGGATTTGTCATCTTGTGCTCTGTACTTGTTTCCAACTAAGGCCTTGGCTCAAGATCAACTAAGAGCGT TAGCAAAGATGATTAAAGGATTTGATACTAGCATAAACATAGGGATATATGACGGTGACACTGCTCTGAAGGACAGGCTGTTGCTTCGTGCGAATGCTAG ATTGTTGATCACAAATCCAGATATGTTACACTTGTCAATTTTACCTTATCATAGACAATTTGATAGAATTTTATCAAATCTCAGGTTTGTGGTGATTGAT GAAGCTCATTATTACAAAGGTGCATTTGGATGCCACACTGCTCTAATATTGAGACGACTTCGTCGTCTCTGTTCTCATGTATATGGCAGTGATCCTTCTT TTGTGTTTTCTACTGCAACTTCTGCCAACCCTTGCGAGCATTGCATGGAACTTGCAAATCTTTCAACATTGGAGCTGATTAAAAATGATGGAAGTCCATC TTCTCGGAAGCTTTTTGTTCTTTGGAATCCTACTTCATGTCCTAGAATCGTGCCAAATAAATCTGAGGGTCACATGGATGTTAGTGAGAGCACAGAGAAA AGCATGAGCCCAATTTCAGAAGTTTCATACCTCTTTGCAGAAATGGTTCAGCATGGACTTCGTTGCATTGCCTTTTGCAGATCTCGTAAACTCACTGAGA TTGTCTTATCTTATACGCGTGAGATTCTTCAAAAGACAGCACCCCACCTTGTAGGCTCAATTTGTGCTTATCGTGCTGGCTATGTTGTTGAGGATCGGAG GCAAATAGAGAGAGATTTTTTCAGTGGGAAACTCTCTGGCATTGCTGCAACAAATGCTCTTGAGTTGGGTATTGATGTTGGCCATATTGATGCCACCCTG CATTTAGGCTTTCCTGGTAGTTTTGCCAGTTTGTGGCAGCAAGCTGGCAGGTCTGGAAGAAGAGAAAGGCCATCTCTTGCTGTATATGTTGCGTTTCAAG GACCTCTGGATCAATATTTTATGAAATTTCCTAAAAAACTCTTCCATGGTCCGATTGAGTGCTGTCATATTGATGCTCAAAACCAGCAGGTGTTGAAGCA ACATCTGGTCTGCGCTGCTCGTGAACACCCATTGAGTTTGCTTCATGATGAGAAATATTTTGGCTCTAGTTTAAGCAATGCGCTGATGTCCCTTAAAAAT AAAGGAGACCTGAGCTTTGATCCTTCACGTGATTCTTTTGCTAGAATATGGAGTTACATTGGGCATGAGAAAATGCCTTCACGTGGAATTAGTATTCGAG CAATAGAGTCCACCAGATACAGAGTGATAGACATGCAGCGGAATGAAGTCCTTGAAGAGATTGAGGAAAGCAAAGCTTTCTTCCAGATATATGAAGGTGC GGTCTATATGCACCAAGGGAAGACCTATATGGTCAAGAAATTGGATATATCAGAAAAGATTGCTTTGTGCTATGAAGCCAACTTGCATTATTATACAAAA ACCCGTGATTATACAGATATTGATGTCCTTGGAGGTGATATTGCCTATCCACCAAGGGCCTTCAAGAACCAGTCTTCAAGAACAGCAGCTCAAGCACTTT CTTGTAAAGTAACAACTACTTGGTTTGGTTTCTATTGCATAAAAAGAGGAAGCAACAAAGTCTTAGATACTTTTGATCTTTCACTACCCAAATATTCATA TGAATCTCAGGCAGTTTGGATTCCAGTTCCTCAGTCAATTAAAAAATTGGTCGAGGAGAAACAATTTTCCTTTCGTGGGGGTTTGCATGCTGCTTCACAT GCTCTTCTCAATGTAGTGCCTTTATATTTAAGATGCAACTCGTCTGACTTAGCTCCAGAGTGTCCAAACCCTCATGATAGCCGTTATTTTCCTGAAAGAA TACTTGTTTATGATCAGCATCCAGGAGGGACAGGTGTCTCAATGCAGATTCAACCTTATTTCACAGAGCTGTTGAATGCTGCTTTGGAACTTCTCACATG TTGCCACTGCTCAGGAGACACTGGCTGCCCAAATTGTGTTCAAAGTATGGTTTGTCACGAGTACAACGAGGTTATTCACAAGGATGCTGCGATTATGATT CTTGAGGGTGTTCTGGATGCAGAGTCTTTCTTTGGAGAAGCAAACGACTCTTCCTAA
AA sequence Show only first row Show all	>Potri.012G063500.5 pacid=42782710 polypeptide=Potri.012G063500.5.p locus=Potri.012G063500 ID=Potri.012G063500.5.v4.1 annot-version=v4.1 MEREVEIEIRTLTGESTKVRISSKKIVNDLKLLLIHASSSPNFHLFFKGVKLSLKTPIDTLSIENGEFLVLVPFNKKKDPPKTPTPDFYKNAPTKPSIST LADSTFSEMMQDLSFLSEKPTTSTSTSTSTNSTAATQPDYMFSGYKRKRGFKDTPTSSSSDKELFCFLWSVLRSPNKNNYIVDDKTKCEKFVEVLDSFSC LTNPHSRTCVFLDLGLCGDKRPSCFCPAWLKRIMQAFAFLNIFTAFLQMQRREITSDSLKDALKNLAKSGLKAGFEDIELLSVLYPKVVIFATNDSKFAN AADVFVIINSETKDKDEIGEPSRKGKKSLSLSTIFNTMKKQESAFKTNLWEAAKFLLCKIGNRVAMPFSLEDLLKFVRKDGISVSESEAKQAKGCHSLAS SSYSFQTRCHETNQLLPVEMVEHLREGIGSKGQIVHVEDIDSRKPIYVQVPNVLSDNMKSALKCMGITKLYSHQAESILASLSGKNVVVATMTSSGKSLC YNVPVLEALSQDLSSCALYLFPTKALAQDQLRALAKMIKGFDTSINIGIYDGDTALKDRLLLRANARLLITNPDMLHLSILPYHRQFDRILSNLRFVVID EAHYYKGAFGCHTALILRRLRRLCSHVYGSDPSFVFSTATSANPCEHCMELANLSTLELIKNDGSPSSRKLFVLWNPTSCPRIVPNKSEGHMDVSESTEK SMSPISEVSYLFAEMVQHGLRCIAFCRSRKLTEIVLSYTREILQKTAPHLVGSICAYRAGYVVEDRRQIERDFFSGKLSGIAATNALELGIDVGHIDATL HLGFPGSFASLWQQAGRSGRRERPSLAVYVAFQGPLDQYFMKFPKKLFHGPIECCHIDAQNQQVLKQHLVCAAREHPLSLLHDEKYFGSSLSNALMSLKN KGDLSFDPSRDSFARIWSYIGHEKMPSRGISIRAIESTRYRVIDMQRNEVLEEIEESKAFFQIYEGAVYMHQGKTYMVKKLDISEKIALCYEANLHYYTK TRDYTDIDVLGGDIAYPPRAFKNQSSRTAAQALSCKVTTTWFGFYCIKRGSNKVLDTFDLSLPKYSYESQAVWIPVPQSIKKLVEEKQFSFRGGLHAASH ALLNVVPLYLRCNSSDLAPECPNPHDSRYFPERILVYDQHPGGTGVSMQIQPYFTELLNAALELLTCCHCSGDTGCPNCVQSMVCHEYNEVIHKDAAIMI LEGVLDAESFFGEANDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063500 [exp]	0	1
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	1.73	0.8661
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	2.44	0.8183
AT4G19160			unknown protein		Potri.003G033300 [exp]	2.82	0.8471
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	7.21	0.8132
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145556 [exp]	7.41	0.7892
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	12.40	0.7873
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	17.32	0.7891
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	17.94	0.7556
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	18.70	0.7714
AT3G28430			unknown protein		Potri.006G073600 [exp]	26.15	0.7502

Compare expression of checked genes

Potri.012G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.