Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 136 / 9e-38 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G65590 124 / 4e-33 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 119 / 9e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 116 / 3e-31 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G28810 117 / 2e-30 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G45610 115 / 2e-30 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 117 / 3e-30 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G21270 114 / 4e-30 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT1G07640 115 / 8e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G28510 114 / 2e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048300 [exp] 364 / 3e-126 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.004G046600 [exp] 121 / 8e-32 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.005G134200 [exp] 120 / 2e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.011G055600 [exp] 120 / 2e-31 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.007G038100 [exp] 120 / 3e-31 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.012G081300 [exp] 119 / 4e-31 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 118 / 7e-31 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.001G238400 [exp] 118 / 9e-31 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.005G149100 [exp] 118 / 1e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007976 [exp] 174 / 2e-52 AT5G60850 165 / 1e-49 OBF binding protein 4 (.1) Lus10017882 [exp] 160 / 5e-47 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10034652 [exp] 144 / 4e-41 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10014001 [exp] 117 / 9e-31 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10040305 [exp] 120 / 1e-30 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10016566 [exp] 118 / 2e-30 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025707 [exp] 117 / 3e-30 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10015425 [exp] 115 / 7e-30 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10029458 [exp] 115 / 2e-29 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10005956 [exp] 115 / 3e-29 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G063800.1 pacid=42783777 polypeptide=Potri.012G063800.1.p locus=Potri.012G063800 ID=Potri.012G063800.1.v4.1 annot-version=v4.1 ATGCAAGACACCCACTCAATTGGAGGAGGAGGCAGGTTATTTAGCGGTGGAGGTGGAGGTGACAGGAAACTACGGCCACACCACCACCAGAACCAACAAG CATTAAAGTGCCCACGATGCGACTCGCTGAACACAAAATTCTGTTACTACAACAATTACAACCTCTCTCAACCTCGTCACTTCTGTAAGAGTTGCCGGCG TTACTGGACTAAAGGGGGTGTCCTCCGCAACGTTCCTGTTGGTGGTGGATGCCGCAAGACTAAGCGGTCTAGGCCTAAACAAAATACACCAATTACAACT TGTGATACAATTACGGCCTCCAGTACCACACCGCAGGAGCTACAGGAACAACATCAGCAGCGAGATCATAAATCCTCCGACTCTCATTCTAGTAGTGAGA GTTCAAGTCTTACTGCTACAAATAACACGAATGCAAATACTACAGCGGAAGCAGTGTCTGCGCTCTCTGTAAGCTCTGTTGTCTCCAATAATTTATTAAA TGGTATTGTTGAATCCAAAATCTTTCCGCATGGGAATGTGAATCCGAGTTTTGAACCTTCTTTGCTCGAGCAAGGATCGGACTGTGGGATTTTTTCTGAG ATTGGGAGTTTTACAAGCTTGATCACATCGACGAATGACTTGTTTGGATTTAGTAACATGATGAGCCAACACCAGCCCCCGCACCAGCAACAGGGGCTCG AGCATCATGTCCAACATAATCAGAACCAGCAGCAGTGGCAAAATCATCAACAGCAGGAGATGACAGGAGGAGGGGGGTTGATTGATCAGACGGTTCACGT TGAGTTATCAGCTTTGCCTAGTAGTAGATCAACAAAGAATGATGATGGGGAATTTGGAGCGTTGGACTGGCAATTAGGGAGTGGTGACCAAGCTACTAGT TTGTTTGATCTTCCTAATGCCGTCGATCAAGCTTACTGGAGTCAGAGCCAATGGAATGATCAAGATCACCCTAGTCTCTACATCCCGTAA
AA sequence Show only first row Show all	>Potri.012G063800.1 pacid=42783777 polypeptide=Potri.012G063800.1.p locus=Potri.012G063800 ID=Potri.012G063800.1.v4.1 annot-version=v4.1 MQDTHSIGGGGRLFSGGGGGDRKLRPHHHQNQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSRPKQNTPITT CDTITASSTTPQELQEQHQQRDHKSSDSHSSSESSSLTATNNTNANTTAEAVSALSVSSVVSNNLLNGIVESKIFPHGNVNPSFEPSLLEQGSDCGIFSE IGSFTSLITSTNDLFGFSNMMSQHQPPHQQQGLEHHVQHNQNQQQWQNHQQQEMTGGGGLIDQTVHVELSALPSSRSTKNDDGEFGALDWQLGSGDQATS LFDLPNAVDQAYWSQSQWNDQDHPSLYIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.012G063800 [exp]	0	1
AT2G25920			unknown protein		Potri.014G122900 [exp]	5.83	0.5895
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	10.19	0.6575
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.015G048300 [exp]	13.71	0.6471
AT2G01260			Protein of unknown function (D...		Potri.008G124000 [exp]	14.59	0.6545
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.003G220900 [exp]	26.49	0.5709
AT5G67350			unknown protein		Potri.005G145100 [exp]	30.59	0.5751
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	34.49	0.6209
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.002G163300 [exp]	41.95	0.5828
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.004G038800 [exp]	46.66	0.6170
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Potri.001G082700 [exp]	61.59	0.5958

Compare expression of checked genes

Potri.012G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.