Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65660 801 / 0 SMP1 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) AT4G37120 763 / 0 SMP2 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1) AT3G45950 481 / 4e-168 Pre-mRNA splicing Prp18-interacting factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048200 [exp] 909 / 0 AT1G65660 830 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022931 [exp] 823 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10024887 [exp] 817 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10028956 [exp] 808 / 0 AT1G65660 891 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10030817 [exp] 255 / 1e-73 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10007480 [exp] 157 / 4e-46 AT4G37120 170 / 6e-52 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10007479 [exp] 105 / 3e-27 AT1G65660 124 / 5e-35 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11708 [poplar] [flax] Slu7 Pre-mRNA splicing Prp18-interacting factor
Representative CDS sequence Show only first row Show all	>Potri.012G064100.2 pacid=42784138 polypeptide=Potri.012G064100.2.p locus=Potri.012G064100 ID=Potri.012G064100.2.v4.1 annot-version=v4.1 ATGGCAACCGCATCAGTTGCATTTAAGTCTAGAGAGGACCATAGGAAGCAGATTGAATTGGAAGAAGCGCGTAAAGCTGGGCTTGCCCCTGCTGAGGTTG ATGAAGATGGAAAGGAGATTAATCCTCATATTCCTCAGTATATGTCATCTGCACCTTGGTATCTTAATGCCGAGAAACCTAGCTTGAAACATCAAAGGAA GTGGAAATCAGATCCTAATTATACAAAATCATGGTATGACAGAGGTGCCAAAGTTTTCCAGGCCGAAAAATATAGAAAGGGTGCATGCATCAACTGTGGA GCAATGACACATGATGCAAAGTCATGTGTTGAAAGGCCCAGGAAAGTTGGTGCAAAGTGGACTAACACACATATAGCCCCTGATGAAAAAATAGAGACGA TTGAGCTTGATTATGATGGCAAGCGAGACCGGTGGAATGGTTATGACCCATCAAGCTATGCTCATGTTGTTGAAAGATATGAAGCTCGAGATGCAGCTCG AAGGAAGCACATGAAGGAACAACAACTTAAGAAATTGGAGGAGAAAAATGGAAATCAAAATGTTGAGGATGGTGTTAGCGATGTGGACAATGATGAGGAT GATTTAAGGGTAGATGAAGCCAAGGTTGATGAGAGCAAACAAATGGACTTTGCAAAGGTTGAGAAGCGTGTGCGAACAACAGGTGGTGGGAGCACAGGAA CTGTTAGGAATTTACGTATTCGCGAGGACACAGCAAAATATCTTTTAAATCTTGATGTTGACTCTGCCCACTATGACCCCAAAACCCGCTCTATGCGTGA GGATCCTCTTCCAGATGCGGATCCAAATGAAAAATTCTATGGGGGAGATAACCGATATAGAAATAGTGGTCAAGCATTGGAGTTCAAGCATCTCAACATC CATGCTTGGGAGGCATTTGACAAGGGACAAGATATTCACATGCAAGCAGCTCCATCACAAGCTGAGTTGCTATATAAAAATCATAAGGTCATAAAAGATA AGTTGAAGACCCGAACAAAGGACACTATTATGGAGAAGTATGGCAATGCGGCTAGTGAAGAGGAAATTCCAAGAGAGCTTCTATTGGGCCAGAGTGAAAG ACAAGTTGAATATGATCGTGCTGGGCGGATTATCAAGGGACAGGAGACTGTGCTTCCTAGAAGCAAGTATGAAGAAGATGTTTTCATTAATAATCACACA ACCGTGTGGGGATCATGGTGGAAGGATCATCAATGGGGCTACAAGTGCTGCAAGCAGATGATTCGGAACAGTTATTGCACGGGTGCTGCTGGAATAAAGG CTGCTGAGGCTGCAACTGATCTTATGAAGACTAATATTGATCGTAAAGAGGCAACTGAAGAGGCACCTGCACCAGTGGAGGAGAGAAGGCTTGCTACCTG GGGAACCGAGGTTCCAGAAGATTTGGTTTTGGATGAAAAGTTACTTGCTGAAGCGCTTAGAAAGGAAGATCAAAGAAAGAGAGAGGAGAAGGATGAGAGG AAGCGGAAATACAATGTCAGGTGGAATGATGAGGTTACTACTGAGGATATGGAGGCATATAGGATGAAGAAAGTACATCATGATGACCCAATGAAGGATT TCCTCCATTAA
AA sequence Show only first row Show all	>Potri.012G064100.2 pacid=42784138 polypeptide=Potri.012G064100.2.p locus=Potri.012G064100 ID=Potri.012G064100.2.v4.1 annot-version=v4.1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKPSLKHQRKWKSDPNYTKSWYDRGAKVFQAEKYRKGACINCG AMTHDAKSCVERPRKVGAKWTNTHIAPDEKIETIELDYDGKRDRWNGYDPSSYAHVVERYEARDAARRKHMKEQQLKKLEEKNGNQNVEDGVSDVDNDED DLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVDSAHYDPKTRSMREDPLPDADPNEKFYGGDNRYRNSGQALEFKHLNI HAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKDKLKTRTKDTIMEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIKGQETVLPRSKYEEDVFINNHT TVWGSWWKDHQWGYKCCKQMIRNSYCTGAAGIKAAEAATDLMKTNIDRKEATEEAPAPVEERRLATWGTEVPEDLVLDEKLLAEALRKEDQRKREEKDER KRKYNVRWNDEVTTEDMEAYRMKKVHHDDPMKDFLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.012G064100 [exp]	0	1
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Potri.003G137400 [exp]	3.74	0.8033
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	7.81	0.8098
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.002G116400 [exp]	18.52	0.7721
AT3G60850			unknown protein		Potri.014G070200 [exp]	24.79	0.7793
AT2G36330			Uncharacterised protein family...		Potri.015G075100 [exp]	27.27	0.7207
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	29.29	0.6833
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.009G088400 [exp]	29.93	0.7618
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	30.59	0.7735
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	34.24	0.7599
AT2G19270			unknown protein		Potri.006G075000 [exp]	34.35	0.7804

Compare expression of checked genes

Potri.012G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.