Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18580 847 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 585 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT5G47780 464 / 4e-158 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 449 / 1e-151 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 444 / 2e-149 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 407 / 1e-136 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G46480 363 / 6e-120 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G02350 354 / 7e-116 GAUT9 galacturonosyltransferase 9 (.1) AT5G54690 333 / 4e-108 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT5G15470 317 / 4e-102 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060800 [exp] 991 / 0 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.019G108900 [exp] 571 / 0 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 556 / 0 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.016G001700 [exp] 470 / 7e-160 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 471 / 9e-160 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 461 / 4e-156 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 450 / 1e-151 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 439 / 1e-148 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 406 / 3e-136 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013506 [exp] 899 / 0 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10007979 [exp] 896 / 0 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 610 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10041389 [exp] 468 / 4e-159 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 467 / 2e-158 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 464 / 4e-156 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 452 / 1e-152 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 453 / 3e-148 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 429 / 3e-134 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011834 [exp] 397 / 1e-132 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.012G064500.2 pacid=42783501 polypeptide=Potri.012G064500.2.p locus=Potri.012G064500 ID=Potri.012G064500.2.v4.1 annot-version=v4.1 ATGAGGAGGCGACCGGCAGAGTACCGGCGCCCAGTTAGAAGGAGGTTATCGCAGTGGATCTTGGCGCTTCTCGGGATGTTCGTGATTGCAGGATTGGTAT TGTTTGTGTTTCACCACAATCACCATGAAGATCAGGTCAAGCAGCCAATGATGGGTGAAAATGCGACAAAAGAGCCTCTAAACCATGAGGGTTTAAATTT CACCAAGGAAATATTAAGTGCCAGTTCATTTTCACGACAGTTGGCAGAACAAATGACACTTGCCAAGGCTTATGTCATTATAGCAAAGGAGCACAATAAT CTTCATCTTGCTTGGGAACTGAGTAATAAGATTAGGAGTTGCCAACTTTTGCTTTCTAAAGCTGCCAAGAGAGGGGAGTCCATAACAGTAGAAGAAGCTG AGCCGATAATCAGTAGCTTATCATATCTCATTTTCAAGGCACAAGACGCTCATTATGATATTTCAACCACCATGATGACAATGAAATCTCATATCCAAGC TCTAGAAGAGCGAACAAATGCAGCAACAGTTCAAAGCACACTCTTTGGTCAGTTGGTGGCTGAGGCTTTGCCCAAGAGTCTTCACTGCCTGAAAGTAAAG CTCACAAATGACTGGCTTAAGCAGCTCCCCCTCCAAAACCATGTGGAGGAGAAGAGAAATTCCCCTCGAGTTATCGACAATAATCTCAACCATTTCTGCA TATTTTCAGACAATGTGCTTGCCACTTCTGTGGTGGTCAACTCCACAATCTCCAATGCTGACCATCCAAAACAGCTTGTCTTCCACATAGTGACGAATGG AATTAGCTATGGATCCATGCAGGTTTGGTTTCTAACTAATGACTTCAAAGGGGCCACTGTAGAAGTGCAGAATATAGAGGAGTTTACCTGGTTGAATGCT TCTTATGCTCCTGTTATCAAACGGCTCCTTGATCAAGATTCAAGGGCCTACTACTTTGGGGCATATCAAGATATGAAGGTTGAGCCAAAACTGCGGAACC CTAAGCACATGTCTTTGCTCAATCACCTCCGGTTTTACATCCCTGAGGTCTATCCACTTTTGGAAAAGGTTGTCTTCCTTGATGATGATGTTGTTGTCCA GAAGGATCTGACCCGGTTGTTTTCTTTGGATTTGCATGGGAATGTAAATGGAGCTGTGGAAACCTGTCTTGAAGCATTTCATCGATATTACAAGTATATC AATTTCTCTAACCCAGTCATCAGCTCAAAATTCGACCCGCAGGCATGTGGTTGGGCATTTGGAATGAACGTTTTTGATTTGATTGCATGGAGGAAGGAAA ATGTGACTGCGCGGTATCATTACTGGCAGGAACAGAATGGTGATCAGATGCTGTGGAAACTGGGAACACTCCCCCCTGCCCTTCTAGCATTTTATGGACT GACCGAGACACTTGATCGGAGATGGCATGTGTTAGGATTGGGATATGACATGAACATTGATGACAGGCTGATTGACAGTGCTGCAGTTATTCACTTTAAC GGGAACATGAAACCATGGTTGAAATTGGCCATTGGCAGATACAAGCCTCTTTGGGAAAGGTACATAAATCAGAGCCACCCGTATTACCAAGATTGTGTCA TTAGTTGA
AA sequence Show only first row Show all	>Potri.012G064500.2 pacid=42783501 polypeptide=Potri.012G064500.2.p locus=Potri.012G064500 ID=Potri.012G064500.2.v4.1 annot-version=v4.1 MRRRPAEYRRPVRRRLSQWILALLGMFVIAGLVLFVFHHNHHEDQVKQPMMGENATKEPLNHEGLNFTKEILSASSFSRQLAEQMTLAKAYVIIAKEHNN LHLAWELSNKIRSCQLLLSKAAKRGESITVEEAEPIISSLSYLIFKAQDAHYDISTTMMTMKSHIQALEERTNAATVQSTLFGQLVAEALPKSLHCLKVK LTNDWLKQLPLQNHVEEKRNSPRVIDNNLNHFCIFSDNVLATSVVVNSTISNADHPKQLVFHIVTNGISYGSMQVWFLTNDFKGATVEVQNIEEFTWLNA SYAPVIKRLLDQDSRAYYFGAYQDMKVEPKLRNPKHMSLLNHLRFYIPEVYPLLEKVVFLDDDVVVQKDLTRLFSLDLHGNVNGAVETCLEAFHRYYKYI NFSNPVISSKFDPQACGWAFGMNVFDLIAWRKENVTARYHYWQEQNGDQMLWKLGTLPPALLAFYGLTETLDRRWHVLGLGYDMNIDDRLIDSAAVIHFN GNMKPWLKLAIGRYKPLWERYINQSHPYYQDCVIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.012G064500 [exp]	0	1
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.001G088000 [exp]	1.41	0.7195	Pt-HEN3.1
AT4G35870			early-responsive to dehydratio...		Potri.005G108600 [exp]	15.81	0.6979
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	17.40	0.6968
AT3G51940			unknown protein		Potri.001G021100 [exp]	24.49	0.6420
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.005G226900 [exp]	25.21	0.5966
AT3G05500			Rubber elongation factor prote...		Potri.005G025700 [exp]	38.43	0.6663	Pt-SRPP.3
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	38.57	0.6422	CNX1.1
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.008G135980 [exp]	41.56	0.5961
AT5G11560			catalytics (.1)		Potri.006G240300 [exp]	43.06	0.6180
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	51.11	0.6496

Compare expression of checked genes

Potri.012G064500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.