Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATMG00310 108 / 3e-30 ATMG00310.1, ORF154 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1) AT4G29090 114 / 1e-29 Ribonuclease H-like superfamily protein (.1) ATMG00320 96 / 1e-25 ATMG00320.1, ORF127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000350 [exp] 70 / 4e-14 AT1G43760 74 / 8e-14 DNAse I-like superfamily protein (.1) Potri.005G148100 [exp] 61 / 6e-11 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 51 / 2e-07 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.006G175124 [exp] 40 / 0.0004 AT3G24255 70 / 8e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016586 [exp] 47 / 1e-06 AT5G64350 189 / 2e-62 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G064850.2 pacid=42782859 polypeptide=Potri.012G064850.2.p locus=Potri.012G064850 ID=Potri.012G064850.2.v4.1 annot-version=v4.1 ATGGGAGTTTTCTTGCTGCCAGTGTATTTATGCGAGGAGTTGCGGAGGATGATGAATAGTTATTGGTGGGGTACTAATCAGGAGCATGGCAGAGGTATTA TTTGGCAGGGATGGGACAGGCTATGCAGAAAGAAAGACATTGGTGGCCTGGGCTTTATAAATTTGCTTTGTTTCAATATGGCACTTCTCGGTATGTTGGG ATCGAAACTTGTTGTCAAACCACACTCACTAGTGAGTAGAATTATCAAAGCTAGATATTTCCCTAGAGGAGACTTTTTACATGCCACACCAGGGCATGAT CCAAGTTATGTTTGGCGAAGCATTCTCAGCTCTCAAGAAGTCCTTAGAAAAGGAACAATCTGGCGAATTGGAACGGGCCAAAAGGTTAGTGTGTGTTCTG AGGCTTGGCTAAAGAATGATTGCAACAGCTTTTCGAACCATTCGGTACTGTGGAGCTTGTACAACTGCCTCTTGACCTTGGGACAGGACAATGCAAAGGT TTTGGATTTGTTCAAGTCGGTGATCATAACCACTTGTCGATTGCAAAAATTTTCTGTGCTATTTAATCTTTCTGAATTTGCTGATTGA
AA sequence Show only first row Show all	>Potri.012G064850.2 pacid=42782859 polypeptide=Potri.012G064850.2.p locus=Potri.012G064850 ID=Potri.012G064850.2.v4.1 annot-version=v4.1 MGVFLLPVYLCEELRRMMNSYWWGTNQEHGRGIIWQGWDRLCRKKDIGGLGFINLLCFNMALLGMLGSKLVVKPHSLVSRIIKARYFPRGDFLHATPGHD PSYVWRSILSSQEVLRKGTIWRIGTGQKVSVCSEAWLKNDCNSFSNHSVLWSLYNCLLTLGQDNAKVLDLFKSVIITTCRLQKFSVLFNLSEFAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATMG00310		ATMG00310.1, OR...	RNA-directed DNA polymerase (r...		Potri.012G064850 [exp]	0	1
					Potri.005G134850 [exp]	7.00	0.9175
AT5G14990			unknown protein		Potri.010G222200 [exp]	14.28	0.9042
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	17.29	0.8587
					Potri.005G152000 [exp]	17.32	0.8717
					Potri.014G093150 [exp]	18.30	0.8948
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082283 [exp]	19.07	0.8549
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	25.92	0.8415
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Potri.004G045800 [exp]	27.20	0.8780
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	30.98	0.8579
					Potri.010G122150 [exp]	31.30	0.8477

Compare expression of checked genes

Potri.012G064850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.