Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08130 352 / 5e-115 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G69010 207 / 3e-62 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 136 / 5e-36 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT1G63650 61 / 2e-09 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G24260 57 / 2e-08 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 56 / 3e-08 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G20180 56 / 4e-08 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT5G67110 53 / 9e-08 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G58010 54 / 1e-07 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT1G09530 54 / 2e-07 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048000 [exp] 811 / 0 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.008G112000 [exp] 246 / 8e-77 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.010G137600 [exp] 235 / 1e-72 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.004G112900 [exp] 224 / 2e-68 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 211 / 1e-63 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.006G135600 [exp] 57 / 2e-08 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.002G252800 [exp] 57 / 2e-08 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.006G186600 [exp] 57 / 3e-08 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 56 / 4e-08 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007974 [exp] 403 / 2e-134 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013502 [exp] 388 / 6e-129 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10026684 [exp] 207 / 7e-62 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 192 / 2e-56 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10034358 [exp] 186 / 6e-54 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10005091 [exp] 167 / 2e-45 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10022833 [exp] 57 / 3e-08 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10021846 [exp] 56 / 4e-08 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10011899 [exp] 55 / 1e-07 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10024811 [exp] 54 / 2e-07 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G065000.3 pacid=42783516 polypeptide=Potri.012G065000.3.p locus=Potri.012G065000 ID=Potri.012G065000.3.v4.1 annot-version=v4.1 ATGGAGCTTCCTCAACAACGTCCTTTCGGAACCGAAGGAAGCAAACCAACACACGACCTTCTTTCACTGTACAGCCATTCTTCAACTGTCCAACAAGATC CAAGACCACCTTCCCAAGGTGGCTACCTCAAAACACATGATTTTCTTCAACCACTAGAACGAGGAGGCAAAACCACTGCCAAAGATATAACCAACGTTGA GGTTTTGACGGTTGAAAAACCACCGCCTCCGGCACCACCACCTTCGGTTGAGCACATCCTCCCTGGAGGAATTGGGACGTACAGTATCAGCCAAATTTCT TATTTCAACGAAAGAGTTCCAAAGCCAGAGAACACAATATTTTCAGTAGCTCAAGATAGCAGTACCGATAAAAATGATGACAACTCAAATTGCAGTTCTT ACTCAGGAAGTGGATTCACACTTTGGGAAGAATCCGCGTTGAAAAAGGGAAAGACAGGGAAGGAGAATGTGGGAGAAAGATCCAATATTATAAGAGAAGC GGCATTGAAGACGGGTCAGTGGACGACTTCAGAGAGGCCGTCACAATCTTCATCGAACAACCATCGCAGTAGTTTCAACTCTCTTTCGTCCTCACAGCCA GCAGGCAGGAGTAGTACCCAGAGCTTCATAGAAATGATAAAGTCAGCCAGAGGCTGTGCTTTGGATGATGATGTTGACGATGAAGAAGAGTTCCTTCTTA AGAAAGAAACCCCTTCTCCTATCCGCAAAGGGGAATTGAGGGTGAAGGTGGACGGAAAGAGCAATGACCAAAAACCTGACACGCCTCGGTCAAAGCATTC TGCAACTGAGCAACGTAGGAGGAGCAAGATAAATGACAGATTTCAGATGCTGAGAGAACTCATTCCTCGTGGTGATCAAAAGAAAGATAAAGCATCTTTT CTCTTAGAGGTCATTGAATACATTCAGTTTCTACAGGAGAAAGTACAGAAATATGATGGATCATACCAAGGATGGAACCACGAAACAGCAAAACTGGTGC CATGGAAAAATAATAGCAGGCCTGTGGAAAGTTCTGTTGATCAGTCTCGAGGCTTGAATAGTGATGCTGGTCCTGCATTATTATTTGCTGCAAAGTTAGA TGAGAGAAACATAACCGTTTCTCCTTCCATTAATCCTGGAGGAGCACGGAATCCAGTCGAATCTGACATGACCTCCGCTAATGCAATGGATCGCCATCCT GGTTGTACAAATAAATCAATACCATTTCCTATCTCGCTGCAGCCGAACTTCAATCCTGGCAGGACTGCAGGCGCAGCAGCTCAGTTTCCACCTCGACTGG CATCTGATGCGGAGAACATGGCAAGCCAAACTCAACCTCAATCATGCCATGCCAGGTCATGGAGCACTGTCGAGGCTGTTGCTAGTGATAAGCTGAAAGA AAAGGATCTGACTGTTGAAGGTGGTACAATCAGCATCTCTAATGCGTACTCTCAAGGGTTGGTAAATACTTTGACGCAAGCCTTACAGAGTTCAGGAGTA GATTTGTCTCGGGCCAGCATCTCAGTGCAGATAGAGCTCGGGAAGACAGGAAATAGTAGACAAACTGCGTCAACATCCATTACAAAGGATAATAACGTTC TCCCTAGCAATAAAGGCACAACACGTTCAAGAGTTTCAAGTGGTGAAGAATCTGGTCAAGCACTAAAGAAGCTCAAGACAAGCAAAGCTAGCGCAAGAGT TGCATAA
AA sequence Show only first row Show all	>Potri.012G065000.3 pacid=42783516 polypeptide=Potri.012G065000.3.p locus=Potri.012G065000 ID=Potri.012G065000.3.v4.1 annot-version=v4.1 MELPQQRPFGTEGSKPTHDLLSLYSHSSTVQQDPRPPSQGGYLKTHDFLQPLERGGKTTAKDITNVEVLTVEKPPPPAPPPSVEHILPGGIGTYSISQIS YFNERVPKPENTIFSVAQDSSTDKNDDNSNCSSYSGSGFTLWEESALKKGKTGKENVGERSNIIREAALKTGQWTTSERPSQSSSNNHRSSFNSLSSSQP AGRSSTQSFIEMIKSARGCALDDDVDDEEEFLLKKETPSPIRKGELRVKVDGKSNDQKPDTPRSKHSATEQRRRSKINDRFQMLRELIPRGDQKKDKASF LLEVIEYIQFLQEKVQKYDGSYQGWNHETAKLVPWKNNSRPVESSVDQSRGLNSDAGPALLFAAKLDERNITVSPSINPGGARNPVESDMTSANAMDRHP GCTNKSIPFPISLQPNFNPGRTAGAAAQFPPRLASDAENMASQTQPQSCHARSWSTVEAVASDKLKEKDLTVEGGTISISNAYSQGLVNTLTQALQSSGV DLSRASISVQIELGKTGNSRQTASTSITKDNNVLPSNKGTTRSRVSSGEESGQALKKLKTSKASARVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.012G065000 [exp]	0	1
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	12.76	0.7904
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	17.66	0.7613	Pt-PHB.1
AT1G77620			P-loop containing nucleoside t...		Potri.005G177000 [exp]	30.65	0.7567
AT4G22190			unknown protein		Potri.006G282000 [exp]	32.98	0.7066
AT4G17260			Lactate/malate dehydrogenase f...		Potri.003G111201 [exp]	35.79	0.7617
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.001G289300 [exp]	36.66	0.7219
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	39.15	0.7394
AT1G68410			Protein phosphatase 2C family ...		Potri.010G121600 [exp]	43.16	0.7331
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	43.37	0.7544
AT4G22190			unknown protein		Potri.011G015500 [exp]	46.08	0.7259

Compare expression of checked genes

Potri.012G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.