Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73880 540 / 0 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT5G03490 353 / 6e-118 UDP-Glycosyltransferase superfamily protein (.1) AT1G51210 349 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) AT1G06000 286 / 6e-92 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 245 / 1e-75 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36800 243 / 1e-74 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 238 / 7e-73 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 237 / 2e-72 UDP-Glycosyltransferase superfamily protein (.1) AT2G15480 236 / 4e-72 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34138 233 / 8e-71 UGT73B1 UDP-glucosyl transferase 73B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137000 [exp] 441 / 6e-152 AT5G03490 482 / 4e-168 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G099032 [exp] 257 / 4e-80 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 256 / 1e-79 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 255 / 1e-79 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 255 / 1e-79 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 252 / 3e-78 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098400 [exp] 251 / 1e-77 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 250 / 2e-77 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.018G009000 [exp] 247 / 1e-76 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034650 [exp] 515 / 0 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10036837 [exp] 385 / 5e-130 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10036840 [exp] 385 / 5e-130 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10013500 [exp] 372 / 1e-124 AT1G73880 379 / 2e-127 UDP-glucosyl transferase 89B1 (.1) Lus10021718 [exp] 330 / 2e-110 AT1G73880 314 / 8e-105 UDP-glucosyl transferase 89B1 (.1) Lus10007972 [exp] 322 / 1e-106 AT1G73880 355 / 1e-119 UDP-glucosyl transferase 89B1 (.1) Lus10014086 [exp] 251 / 9e-78 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10020124 [exp] 250 / 2e-77 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10016268 [exp] 250 / 4e-77 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10026926 [exp] 242 / 2e-74 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.012G065100.1 pacid=42784086 polypeptide=Potri.012G065100.1.p locus=Potri.012G065100 ID=Potri.012G065100.1.v4.1 annot-version=v4.1 ATGAGCGCTGGAGCACATGTCTTACTCTTTCCTTTTCCAGCTCAAGGCCACCTGATCCCTCTCCTAGACCTAGCCCACCATCTAGTCATCCGTGGCCTAA CCATAACCATCTTGGTGACCCCAAAAAACCTACCTATCTTGAACCCTCTCCTCTCCAAAAATTCAACAATCAATACCCTAGTCCTTCCTTTCCCTAATTA CCCCTCAATCCCTTTGGGCATCGAAAATCTCAAGGACTTGCCTCCAAATATTCGTCCAACATCCATGATACATGCCCTTGGTGAACTCTACCAGCCTTTG CTCAGTTGGTTCAGATCCCACCCATCTCCACCTGTAGCAATAATCTCTGATATGTTCTTAGGGTGGACCCACCGCCTAGCTTGTCAGCTCGGCGTTCGCC GTTTCGTGTTCTCTCCCTCAGGAGCCATGGCGTTAGCCACAATGTATTCACTTTGGCAAGAAATGCCCAACGCCCCAAAAGACCAAAACGAATTGTTTTC GTTTTCCAAGATTCCAAGTTGTCCAAAATACCCATGGTTGCAGATCTCTACGATTTATCGTAGCTACGTGGAGGGAGATCCAGTTTCGGAATTCACCAAA GAAGGGATGGAAGCTAACATCGCGAGCTGGGGACTCATCGTTAACTCGTTGACTTTGCTAGAAGGGATTTATTTCGAGCATTTAAGAAAGCAATTGGGCC ATGATCGTGTGTGGGCTGTTGGACCGATACTCCCTGAAAAAACGATAGATATGACCCCACCTGAGAGAGGTGTTTCGATGCATGATTTAAAGACGTGGCT TGACACGTGTGAAGATCATAAGGTTGTTTATGTCTGCTATGGGACTCAAGTTGTTCTGACAAAATATCAAATGGAGGCGGTAGCATCAGGATTGGAGAAG AGTGGAGTCCATTTTATATGGTGTGTGAAGCAGCCCAGTAAAGAACACGTGGGAGAAGGATATAGCATGATCCCATCAGGGTTTGAAGATCGTGTGGCTG GAAGGGGGCTTATCATAAGAGGATGGGCCCCGCAAGTTTGGATACTGAGTCACCGTGCTGTGGGGGCTTTCTTGACTCATTGTGGGTGGAACTCGATCCT TGAAGGGATAGTGGCGGGTGTGCCAATGCTAGCATGTCCCATGGCGGCTGATCAATTTGTGGGTGCTACTTTATTGGTTGAAGACTTGAAGGTGGCTAAA AGGGTATGTGATGGCGCAAATTTAGTGTCTAACTCGGCGAAGTTGGCACGAACGCTGATGGAATCAGTGAGTGATGAGAGCCGAGTTGAAAAGGAGAGAG CTAAAGAGCTACGTATGGCAGCACTTGATGCTATTAAAGAGGATGGGAGTTCGGACAAGCACTTGAATGCATTTGTGAAGCATGTAGTTGGATTGGGGAT GGAGACTGACAAGGGATAA
AA sequence Show only first row Show all	>Potri.012G065100.1 pacid=42784086 polypeptide=Potri.012G065100.1.p locus=Potri.012G065100 ID=Potri.012G065100.1.v4.1 annot-version=v4.1 MSAGAHVLLFPFPAQGHLIPLLDLAHHLVIRGLTITILVTPKNLPILNPLLSKNSTINTLVLPFPNYPSIPLGIENLKDLPPNIRPTSMIHALGELYQPL LSWFRSHPSPPVAIISDMFLGWTHRLACQLGVRRFVFSPSGAMALATMYSLWQEMPNAPKDQNELFSFSKIPSCPKYPWLQISTIYRSYVEGDPVSEFTK EGMEANIASWGLIVNSLTLLEGIYFEHLRKQLGHDRVWAVGPILPEKTIDMTPPERGVSMHDLKTWLDTCEDHKVVYVCYGTQVVLTKYQMEAVASGLEK SGVHFIWCVKQPSKEHVGEGYSMIPSGFEDRVAGRGLIIRGWAPQVWILSHRAVGAFLTHCGWNSILEGIVAGVPMLACPMAADQFVGATLLVEDLKVAK RVCDGANLVSNSAKLARTLMESVSDESRVEKERAKELRMAALDAIKEDGSSDKHLNAFVKHVVGLGMETDKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	0	1
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	1.41	0.9351
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	2.44	0.9333
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	3.16	0.9211
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.003G056600 [exp]	4.24	0.9320
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	7.07	0.8943
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	7.93	0.8981
AT5G57340			unknown protein		Potri.006G165500 [exp]	8.00	0.8767
AT5G07670			RNI-like superfamily protein (...		Potri.002G143200 [exp]	8.60	0.8875
					Potri.002G139000 [exp]	10.95	0.8900
AT2G15580			RING/U-box superfamily protein...		Potri.018G114500 [exp]	11.95	0.9012

Compare expression of checked genes

Potri.012G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.