Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42660 1107 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G67320 84 / 3e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G11160 83 / 7e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 79 / 2e-15 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 77 / 9e-15 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G23430 79 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 76 / 2e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 77 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 77 / 7e-14 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 74 / 3e-13 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087200 [exp] 89 / 1e-18 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 81 / 3e-15 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 79 / 6e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 79 / 7e-15 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 76 / 1e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 77 / 3e-14 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 75 / 4e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 74 / 7e-14 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 74 / 2e-13 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034648 [exp] 1264 / 0 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021720 [exp] 1236 / 0 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 85 / 3e-16 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 84 / 3e-16 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 76 / 3e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 75 / 5e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043473 [exp] 76 / 1e-13 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10041007 [exp] 75 / 2e-13 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 73 / 2e-13 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 74 / 3e-13 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0434 [poplar] [flax] Sialidase PF12341 [poplar] [flax] Mcl1_mid Minichromosome loss protein, Mcl1, middle region
Representative CDS sequence Show only first row Show all	>Potri.012G065200.1 pacid=42784092 polypeptide=Potri.012G065200.1.p locus=Potri.012G065200 ID=Potri.012G065200.1.v4.1 annot-version=v4.1 ATGAAAGTCCGTACACTGAAACTAAGAGAAGCTCATAAATCCATCAATGGCAACAATGACATCAACCCTTCCTTCTGTTCTGTCTTATGGGACCAACAGG CCCTTCATCTTGTTACAGCCTCCTCCTCTGACCCATCAATCTCCATCCATGACCCTCTCCTCCCTTCAAATCCTCCAAAGATTCTCCGTCACCACCGCGA TGGCGTCACTGCCTTAGCTCTTAGCCCTAATTCTACCTGCCTCGCCTCTGGATCTATTGACCACTCCGTCAAGCTCTTCAAGTTTCCAAGTGGTGAGTTT GAGACTAATGTTACTAGATTCACGCTGCCGATTCGTGCTCTTGCATTTAATAAATCAGGGAGCATGGTCGCAGCTGCTGGTGACGATGAAGGCATTAAAC TTATTAATACAATCGATGGTTCTATTGCGAGGGTTCTGAAAGGACATAAAGGACCTGTCACTGGCTTAGCTTTTGACCCTATTAACGAGTACTTGGCAAC AGTAGATTCTGTTGGGACTGTTTTATTTTGGGAACTGCAGTCTGGTGGGATCTTACATACCCTAAAGGGTGTTGCTCCTAACATTATTTCAGACACTTCT TTCATGAATGTTGTTAGTTGGAGTCCTGACGGGGAGACCTTGGCTGTCCCTGGTTTGAGAAATGATGTTGTGATGTATGATAGAGACACGGCAGAGAAGC TGTTTTCACTGAGAGGTGATCATGTACAGCCTGTATGTTATTTGTCTTGGTCACCTAATGGCAAATACATGGCCACTTCTGGTTTGGATAGACAGATTCT GATATGGGATGTCGATAAGAAGCAGGACATTGACAGGCAGAAGTTTGAGGATAGAATAAGTGGTATGGCTTGGAAGCCAATTGGTAATGCATTGGCTGTT ATTGATGTTATGGGAAAGTATGGTCTGTGGGAATCGGTTGTTCCTTCGTCAATGAAATCTCCTACGGAAGATATTCCAAGTTTGAAGAACATTAATGGAG TTCTTTTGTTTGACGAGGATCCAGAGCCAAGTATATCTGGTGGTTTAAGTGAATTTGGTGAAGATAGTCTTGGTGAATCAGAACCATGTAGCAGGAAGAG ATTACGTAAACAGTCTGAATTTGAAGATCCAGACGAGGACATTGATGATGAGTTGAGCTTGCTTCCAAAGACTGAACCCAGAAAAAAGGTGCATCGTGCC AGCAAGGATAACTTGGATAAGGGAAATGGACTCAGAAGTACAGTGACATCTGCTAGGTTGAAAATGCAGGAGGCATTTCAGCCAGGCGCTACTCCTCCAC AGCGTGGAAAGAGGCGCTTCCTGTGCTACAACATGCTTGGAACTATAACTGCAGTGGAGAATGACGGATACTCCCACATAGAGATCGACTTTCATGATAC TGGCAGAGGTCCACGACTTCCGTCAATGACCGACTATTTTGGTTTCACAATGGCCTCATTAAATGAGAATGGAAGTGTTTTTGCCAATCCCTGCAAAGGT GAAAAGAATATGAGTACTCTCATGTATCGCCCGTTCAGCAGCTGGGCAAACAACAGTGAGTGGTCTATGCGATTTGAAGGGGAAGAAGTGAAAGTTGTGG CACTTGGTACTGCTTGGGTTGCTGCAATTACTAGTCTTAATTTTCTGCGCATCTACACTGATGGTGGTTTGCAGAGGCATATTCTCTCCCTTGATGGACC AGTGGTGACTGCGTCAGGCTTAAAAAATCAACTTGCTGTTGTCACTCATGTTTCTGACTGTCTTCCTTCAAATGACCAGATGCTAGAGTTCAGAGTATTT GACATATCTAATGGGACCCAGCCACTCACAGGGCGTCTTCCCTTAACTCCAGGTTCACATCTAACATGGTTTGGGTTTAGTGAAGAAGGCCAATTAAGTT CATATGACTCAAAGGGTGTTTTGCGGGTTTTTACAAGCCAATATGGTGGTAACTGGCTCCCAATCTTCAGTGCCAGTAAAGAGAAGAAGTCTGATGAAAG CTACTGGGTGGTTGGACTAAATGCTAGCAAGTTGTTTTGTATTGTTTACAAGGATCCTGACATGTTCCCACAGGTGATACCCAAACCAGTCCTCTCCCTT TTGAATCTCTCATTCCCTGTAGCATCCTCTGATCTTGGAGCAGATGCCCTGGAAAATGAGTTTATAATGAACAGCATGCACCTCTCACAGATTCAGAAAA GGATGGAAGACATGGCAGGTGCCTGTTTGGATACTACTGCACTAGATGATGAATCTTTCAATATGGAGGCAACTCAAGATAGATGCATCCTGAGACTAAT TGCTTCTTGCTGTAATGGTGATAAGCTTGTGAGGGCTACGGAACTTATGAAGCTTTTATCTCTGGAAAAATCAATGAAGGGAGCAATAAAGCTTGTTACA GCGCTGAAGCTTCCAAATTTGGCCGAACGATTCAACAGCATACTGGAGGAAAGATTGGTCAATGAATCCAAGGGAACTTACAAAAGCCCCCTCCTGAACT CAAATGATCGTGCATCTCTCACAGCTGATGCTGCAATCAGCAAGACGATGGCGACTTCAATTGGAAAAAATGAAACACCCGAACCTAGCATTGCATTCTC ATCACCGACACTGTCAGCCCCCCTATTTATCAAAAAGGCAAATAAGCAAGAGCATGAAAAAAGTTATCAGAACCAAACTGTAAATGCAAAGACCAGTATG GAGCCAAGCAATGCAGAGAAGGTGAAAAGTGCTGAAAATGTGATTGGAGTAGAAGTAAAGATGACAGGCGAGGTGTTAAAGGTACAATCACAACGCCCGT CTAATCCATTTTTAAAGTCATCAAACAATCAGGAAACTTCGAAGAAAGATCTGGATCAGTTAACATCCCCGCATCCCTCAAATCCTTTTAAAAAAACACC ACATTGA
AA sequence Show only first row Show all	>Potri.012G065200.1 pacid=42784092 polypeptide=Potri.012G065200.1.p locus=Potri.012G065200 ID=Potri.012G065200.1.v4.1 annot-version=v4.1 MKVRTLKLREAHKSINGNNDINPSFCSVLWDQQALHLVTASSSDPSISIHDPLLPSNPPKILRHHRDGVTALALSPNSTCLASGSIDHSVKLFKFPSGEF ETNVTRFTLPIRALAFNKSGSMVAAAGDDEGIKLINTIDGSIARVLKGHKGPVTGLAFDPINEYLATVDSVGTVLFWELQSGGILHTLKGVAPNIISDTS FMNVVSWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHVQPVCYLSWSPNGKYMATSGLDRQILIWDVDKKQDIDRQKFEDRISGMAWKPIGNALAV IDVMGKYGLWESVVPSSMKSPTEDIPSLKNINGVLLFDEDPEPSISGGLSEFGEDSLGESEPCSRKRLRKQSEFEDPDEDIDDELSLLPKTEPRKKVHRA SKDNLDKGNGLRSTVTSARLKMQEAFQPGATPPQRGKRRFLCYNMLGTITAVENDGYSHIEIDFHDTGRGPRLPSMTDYFGFTMASLNENGSVFANPCKG EKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGTAWVAAITSLNFLRIYTDGGLQRHILSLDGPVVTASGLKNQLAVVTHVSDCLPSNDQMLEFRVF DISNGTQPLTGRLPLTPGSHLTWFGFSEEGQLSSYDSKGVLRVFTSQYGGNWLPIFSASKEKKSDESYWVVGLNASKLFCIVYKDPDMFPQVIPKPVLSL LNLSFPVASSDLGADALENEFIMNSMHLSQIQKRMEDMAGACLDTTALDDESFNMEATQDRCILRLIASCCNGDKLVRATELMKLLSLEKSMKGAIKLVT ALKLPNLAERFNSILEERLVNESKGTYKSPLLNSNDRASLTADAAISKTMATSIGKNETPEPSIAFSSPTLSAPLFIKKANKQEHEKSYQNQTVNAKTSM EPSNAEKVKSAENVIGVEVKMTGEVLKVQSQRPSNPFLKSSNNQETSKKDLDQLTSPHPSNPFKKTPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	0	1
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	1.73	0.9727
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	2.44	0.9666
AT3G23740			unknown protein		Potri.002G236300 [exp]	3.74	0.9254
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	3.87	0.9621
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	4.47	0.9533
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	4.47	0.9479	Pt-UBP21.2
AT5G37930			Protein with RING/U-box and TR...		Potri.017G122800 [exp]	4.47	0.9062
AT2G37960			unknown protein		Potri.006G094600 [exp]	8.48	0.9251
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	8.71	0.9065
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	8.83	0.9300

Compare expression of checked genes

Potri.012G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.